RNA id: TU157574


Basic Information

Item Value
RNA id TU157574
length 8865
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G133386
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15597408 ~ 15606339 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCGCAGGTATGTTTACGCTTGACGTTAGCGTTAATCTTTCATCCCATTAAAACAGCGACTACATGAACACCTAACACACGCTACGCGCACAGGCTTCAGTAGCTGTCTATCAGCGATGCGTCATGGGCTTCAAAGGAGATTTTCGTGCGCTGTCTGCTGAAGACAGTTTGAgtttaatgaatgaaaagtgTGATATTGCAGTGAGGTGTCTGATCATTTGATTCGCTAAATATTGAATTTGACCAAGACTGATGAAAAATATAGACACTTTGATAAACATTTCAATGCCACATTACATACCACATACAACAGACTGAAAGACAACAACTGATTCTTGAGATAACTGTTTAATTGCTGTCTAACTAAGCTTTTCTCAGCATCATATTGTTTAACCCCATCAGTTCTCAAAAAGACTCAAGTCAAAAATTTACTGGTAGCCGGTATATATTATAACAAAAAAGCAAGTAAAAATGAGCTAGGAGCTTCCAGCTGTCAGTCACTAAAGATACTCTTTTGAGCCTGGTATCAGCCCAATGGGGGTTTAATTATCTCGCTTTTGTTATTCACACAACGGATCTGCTTTATCCTCTTAAAACAAGATTCCACTAAGAGCTCAAATTCAGTCTCCCCCCTTAAACAGACGACTGACCACTTTGAAGCCCTCTTTGGCTGCCAGCTCACAGAGTGTCTTTTGGCAACACTTGGAGGTCCTGATGGAACCTTGGATGCTGGGGTGGGTTTCCTGGAGGCTGGAAGACAGACTAACTCACAAGGAGGCAAAGACAATGGGAAGCCTTTGAAATGTAGTGTGGGTCGAGGAAGAGAGTAGCAGTGGTGAGCTGGAAACCCTGCAGGGAGCTGAACTGGTCAAACTCTTAATACTACAGGGGGACTTTCTGTCACTCTgctgtttttactttttctttctttcttccttctggTTTCTTTCTACTTTTACAAATACATCATATCTAGTTTAACCAATTTAAAGCTCTAGAACCTTTTGCCCTTCCTCATGTATTTGTTATTTATCTGTTAGCAGTATTGCTGTAGAGGTGAAACTAGTTTCTGACTGGTAAACAGTCTCTATTAAGCCATGTTTCATGGCTTGAGGAAAAGTATCTGAAATGTTCCTTATAACTAAAAGCcaagaaaagaataataaaagacAGGGAAATTAGATGTAATCAGGACAGAATAATTTATATCCATTTTAATCCCTTCTAACTGAGGCAGACATTCAATGCCATGAGTGGCTcaggaattttttaaaaacatatgttTGTAGTTGGTGTTGATGGAAGTAGGAGGAGAATAAACCAAATGAACATATTAGCCAACTGAAGCTCTCTTTGGTGTGCTCTGAATGCCTTTTTAGTTTAAATGAGGCTCTAAAACATCAAACTGTCCCACCAGATCATAAATCATAAAGCAATATTTAAGGATATATTTGTTGAGTTCACCACATTCCTCAGCAGTATTTTGACAGGATCTGCAGCTCCCTTGAGCTTTGACCAATGCTACAGTCCTCCGATGATCATTTAAACACAGTGAGCTTGTAGGGGATGTGTTTTTTCTTCCCACCGTCTTATTACTGTTTCAGCGAACCAATGAATTACCACAGTGACAGTTTCATTGGCAGGGTAGCAGGAAGCGGAGACTTTTCATCAGCGTAGGTCAAACTCTTAAAACCAAGCTAGAGACCAGTAGTCCTCCATGCTGTTGCAGCACACCAACCATTTTATATGCTACACCTTGACTTTCCATCCACAAACCTTCTAGCATAATGAGCTCTGAAAGGGAGCTGCTGTGGCCCTCTAGGCAGACACAAATATTTTACAACTAGCTTCCGCATGATTGCATTTATTCTTATGACCTGTGGGATATGAGAGAAGCTGAGGCTTCTAGTGACCACTTGTCCCAACCTCCGTAACCAAATCTCTATAGGCACTAATGTGATATGCcattagtttaaaaaatgatcTGTTTACATAAGGGACACAACTTCTCTGTCAGAAGGCCCTAGTCCCAGTGATTTGGGGTTTTTTCCAGATGGCATCAGATTAGGCCCGGACCTTTATTCCATCAGCCCGCCACAAGAGTGCCTCTATTCTTAAATATGTCACGTCTGAGATGAGGCCAAAATAATGAAACCGGAGCTGCTCCGTGCTAGCCATCGTGAGGGGGTTTTACAAGTGCTGACTGGACTATGAACCCTTAGTAAAGAATTtagataaggaataaaacaaaaatgcagcccAGGGAATTATTGGGGTAAAATGGAAGCTGAGCGTTttactgtctttttctttttttgttcgaGCTATTAAAGTTTCCACTGTATTAAGCAGCTTTTATTTGACAATTTCCCACATTTTATCCATACTATTGAGTCAGGACATACGATTTCCATTTGTCCCCCAATAATCGCAAAGGCCAGGTTGTAGAGAAAAGAGGCTTTATTGAGCATGCAGCAACATTAGCAGCACTCTCGCTCTTTCAGGTCCATAATAGAGCCTCCATGCTTGTACTGGTGGCCAAAGCCAGTATGTCCATTCTCTGAAGCCAGCTATTTGTGCTTCATTGTGGGTTATTGATTGCATCGCTTCATTGACTGCACTATGTACTGCTTTCagagaaatattaaaaagagcCACAGGCAACTAAACAGCCCGCCATTTAAATACGTGATGAGATAAAATGGTCCAGTTTTctggaaaacataaaatattctgATTTGTGCTACGTTAATAGAAGAAAATCTAAATCAGTTTTGGTCAAATACAGCCAAATATATTGACCAAAAATACTGACCAAagcagtggttaagatgttggactagtGATCGTtcctgagttcaaatcccagcagtgccaagctgccactgctggccacttgagcaaggccctttatcctcagttgtataaatgagataaatgtaagtcactctggatagcggcatctgccaaatgtaaatgtaaatgcaaagcTGTTCCACAAATTAATTGATGCATAGCCGAAAAGAGAACTCCATTACATCTACACCTTGTCAATAAGTGCAAAATCCATCATTCAACCCTGCTACCTTTCGCCAAGCACACTAATCCTTCCCTAAATCCTGAATGATAGTCAAAATAATCTCTGGCTCAGCACAGCAGGTGATATCTTGCTTCCTAACTACAGCACCAGTTTTCCTAACAAATGATAGATTGCCCTTAACTCTTCTCTTAACCCTGCACCATGAAAATAAGAGCACCCAAATTCCAGGTGAAATTCAGCATTTCCCATGGAAGTGCAATAAAATGCATAGGTCAGAAAGGGGATCACACAGACGGAAAAGTTTTTGGTTTTTAGCTCATGTTGTGCTTATCACCACCTTGTGATTAATTATAGGATGATTTGAGCAGAGGAACTGCAACAGGACAAAAAAAGATTCAAGATTCCTGTTCAGAAAAACTACAGATTCACTTGTATATTATGTCCATGACCTTATAAAGAAGccttattttaataaaataaaattttgtgtattgttaaaagcaAAGACGTTTTTGTGGAGTCCTGATAATGCTTTCAACATCTACACAGTATTCTTTCAACATCTACCATTACAATAAATAAGCTGTATAAAAATAAGCTGTATAAATAAGCTAGTACTGATTTCTTATCAAATATCCCAAAAATTCTTTACTACAACCAAGGTAACTTCGCAAAGGAAAGTCTCCTATATAGCTGCTAAAGAAAATGAGATAAACAAGAAccacagttaaaaatatttttactaagCTAAAGTATGAACTTATTCATAAAGTGTGAAATTATTCAGCCCCATTTCTTTAGTATGTTGCTATCTAAAATCTCATCTTTGGAGGATGTTGCTCTCTGACTGACAAGCCCATGATCCCTGCATCACATGTGGAAACACAACTGGCTGGAAGTGGTACTGGTTTAGAAGCTGTCAAAGGAGAGGTGAGTCTTGGAAAAGCAGTGTCAGATCTTAGTGCAGACTGGTTTAGAAAATCCTGCTGGAGCAGTTCTGAGCAACTCACAGGTGAAGTCTTCGCTAATGCTGTCACTCCACCGAGCAGCTGATCCGAATGCCTCCACACAACAGCACCAGCAGTCTGGTTTGCATGCCAAGCATTTCTACTcattgtatctctctctctcaatatcAATTTGAACTTGTTTCTGATGAAAGAAATATATTGAGTACTGCAGTTGTTCCCAAGTTGTTTGGGAAATGTATAATCTATATATTCTTTCTAGCTTCTTAAAAATTTACTGTCTGCTTGCTATCTTCATTCACTGCATTCTCTCTCATCAAATCGACTACCAAATCTTAACTACAGCACCAGCAGTGAATGCATTTACCATGCTTTTTTGGCTAATGCCACAGATTAAGCAAAACTGGTTGTGGCTCCTTGCATAAATGAAGATCAcgtgattttgtctttttagtgATTTGcccttcattcatttatttgaacCATTCAGCAGTGGCCCAAGCGTAAGTGCTTCAGGACACCTTTCTTCAGTGTTGGCAGTATGATTACTCTTTGTCACCATAGTAGACAGCAAGCTTCAGTTCAGTGGAATCTCCTGGATTTCCTCTTCTATCAGCTTAGACAGTACCAGGTCATATATACTGTACCATCTCACTTGGCCAGAAGTGATATGAGCATGCTTAAAAGAAGTACAATATGTGTTCCCCCTCCTATTCAGCATGAATTACAGGTAGGAGTAGTCTGGAGAAGACAGCAGAGTTTGCAGCaggatatataaaaaaaaaatgaaatatgagaAAGACAGCCAAACCTCTGTTTATTTCAATGTGCATAGTCTGCCTTTCCAGGAACGGTGACCCATCAGCAATGGGCTACGCATTAGTCCCGCTTCGGCATCTGAACTGTCAATCAGACTCTGCTAAACAAGGTACATGCTGTATTCACCTTTTACATGCACATTGATTCGTACTGTAGCACTACAGGAGTATGCCCACATAGAGCACCTCCTCTGAGCATTGAATTGCAGTGCAGACttttcagtgtaattttttGGATGCACTGAGCTGATGAGCCTCCTTGGTGGCTAATTCAATGGACAcagttatttcagttatttcaaGTTGAGCGCATTTTCTGTTAGCAGGTATTTCTGAATAGCTTCACTCCTCAGCCCACACGAGTCTGTCTCTTGAATTTGCAGTGCTGTGCCTGCAAACATTGCTGCAAACTTTCTTTTATGAAACTGAATGTGGTTGGCAATAACTAACAACCAGTAACATCTTGTTCCTGGTAAGAGaactatatattatttttcattaccaTAAGTTTCTCCACTTCAGTGTTTCTGTCTGGAAAACGTAAGTAAACTGTAGGGAAACACTACCACTAACCCTTGCCATAtcaacatatttaacatatcaACATCGCACTAATTACtctgttgtttaaaatgttgcttGTTTCACAGGCTCTCGAATGCTGGTGTCAGATATTTGAAGTAAAATCTTAATTGCAATATTTCAGCATTACAACAAATGAACCATACAGACACAAAGATGTAAAGTCAACTTGCCTTGCTGGTTTTTGATGACATTTTGATGCAGCATTCACACTGTTCCAACATGcaacacatcacaacacacagtatATCAGACCTGTAATAACAGAAACTTGaagcgttgtttttttttccacagggaAAAGCAGACGTATTTTATTGATCTTTTTTTACTGATCTCTGAAAATCAACTACGCAAATAAGAATCCCAAAGTGAAGTAAAGTGCCTATCTAATTCACAATGTCCCACTGCTCAAAGGAaactgataaactgataaactgataaaagcAATGTTTAGCTCACTGCTTACAGTAACGTtctattgcaaaaaaaaaaaaactacagaaatctgaaaaattaAAGGATAACACATAATGTGTTGatccaccagaacagcttcagtgtgtttgaacagagactctacaagtctctggaactgtactagagcgatctggtgagtgtgaaaGCTATATTTTACAAGCATATATTTTACATCACTTTCATTCCTATCAAGCCATTCAGTGAGCCCCCATGCTTTGTGGATGGAGGCGGGGTCATCCTAgaagagaccacacccactgaGTTAGAAATGCTTCATAGTAAGATAAATGTgatcagaataactttgtattaaTTTGCACTGGCCCCTCTCTCTAAGGGAACACATGAACCCAAACCATACTATCAAAATGCCCcctacagcataacagagccaccaatttttcctttaatttgcaTATGAGTCTAGATGTTTAACACAGTGTTAGACGTTACTGAAGGTGCAAAAAGCAAAATCAGTGGCAAAATTATGTTACCAGGTTATCATCATTTTTGACGACATGAATACCATGCACTTATACAAATGACTCCGCTACCAAACATCTCCATCTATAAGCATGACTCTTCTCTGACCCCCATGACACATAGTGATTATGACTCATATCTATAGTGGCCTACCATTAATTTGCACTGTCGtgcttttacattacatttcatgtGAGGTCATAAATAAATGGAGGGTGAGAGAGGGGGATAAAGAGATAATTTGTCAGGAcagatgacaaaaataaaaataagtgctTCATTAGGTTAAAAGCCCTGTCATGGCCCTGCTACATGGCTGTGCTCCCAGCGGAATCCAGCGCCACAGAAAAATGCAATAGAAACCTTGGTTAGAGACAGCATACAGCATGACTTTACTTCTGTTACTAAAATCTGGCCTCACATACACTATGACAGGAAGAGACAGGCGTAGTGTCTACTGTAGGCTTTTTTGCATCAAATTTGTGCATTGTATGGAACTATGATAGCCTCAACAGAAAACCACACCATTCACATCACAGGACTCAAAAATAATGCCATGATTTACATCTGCATGATCACCAACCTATCTGCTGCACTGTAAGACCAAGTCTATGCCCCCGTCCATATGTAAATAGGTGTTTTTGAAaacacagctttttaaaaatatctctgTCCAGTACTCATATACTAGTCATATGGTCCCTAATTACACGGTAACCACCAGCTCATCTGATTTACTTAAGTTGTAAACACTACAAAATTTTACATGCATGAACGAAGGAAAGTAGAAGagtttactttctttcttcccaTTTTAGGAAAATATGTTACATACAGCAGttaataagaaagtgtgcatgtgaACCTTTCTGTTTAACTAAAACAGACGAGCAGCCGTTCTTTCCCCAAGAGCCTGGTGGTTACCGTTAAGCCCTGTATATACGCACACTCCAGATTCTGCTGTGATGGGCTGGACCATGCTGTTTGAGCGCATCTGTGCTGACCGGTGCAAACAgctatttaatcactttctaagtATCATTTATAAACTGTTAGAGTTAACACTTCATTGTAGGgctatttcctcttttttctttttttgctttctcacTTCATTTTCTCCTGGaaaagtgccatttttgaccatttaactgaaaaaaattggccaaaaatagtcaaaaacaTCACTTTTTTGAAGGAATTTTTTGGTGGCATCACTAataaatatagataaatatagataataaatatagattttattgATAGATTgatgatagatagattgatttcacattaatgaacttaaaACATTCTTAAAACATTTTCTATTCTTTCATGTGGGAAAATCAAGAAGGAGACAAGAGATTATTAATGTGAGATGGGAGGAAGGCTTCCAGGGGTGTCAGTTAAAATCTGAGAGTTTAAAACACCTatgcaactgtcagtcattccagattcactCAGATGACTGCTctgttggtgtatttttgagtgataactcctTAAATCCGATGTCAATAAATTTGGAATTCTTACACAAAATACATATACGCTGGCAGGTCTGCAAAAATAGTGAAAATGGAGGGCCTAAGAGACTACTGGTATGTTGCATCCTAACATATTTTTGTTTAGCCCAACAGCAGCAATTTTCCTCCTAACATGCTCATCAGAACAGCAATTTGCAGCGAAGCAGTTAATCTTCCCGTCCACCAATAATGAGAGATTGGCAAGGCAAAGGGAAAGCCCACAGTCTAATGCTAAACACCGGCTGGGTTTTAAAGTGTAATTAGGGAGTAACGAACAATCTtcctaagtgtgtgtgcagccaTTGCCATCTACACATTTGCTCAGCTTAAAGACAGAGGAGCTGTCCAGTGggtgtgtgcttgtgtagtGTAATGGCTTAATTCCTATTGATTACAAAAGAAGACTGCAGAGTAAGTTTTCTGGGTGAGTTACAGTCATTTCAGGCTTTGGAAAACTGTGCTAATGTTCAGTGAAATATCAGAAAGAGAACAAACCTTTTTATCAGTCATTCTGTCTTagtttacacaaacacagacacacacaaacacatattcTAACCTCAGGAGTTACTCTGAGGCTGTGGAAAGAGGTGATCCAGCATAGcaacacactgtctctctgtcttttctttccagGGAAGTGAGGGACAGCAGCCCTCTGACATGTAAAAGAGCAGTGACGGACATAAGTATGAGAGGCAATTTGCTCGTCTATGGTACAGGAGAGGCTTTAATAAAAAGCCACAGCTTAAAGGACAAGAAAGTGAGAGGCGAAACCCCTCAAATGCCAGACAGAAGGGAAGAGCCACCATATTAAAAAGCAGCCTCCAGCCTGCAGTTCTGAAAAGCTCACTGAACTAGTGAGGCAGTGTAAAATCCTACATCTGAGAAAAATACCTTAGAAACTTGAAACACATAACCATATCAACTGTATCATGAAATCCTGAATTTTCTTAACATTAGACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157510 lncRNA upstream 171036 15425189 ~ 15426372 (+) True G133342
TU157491 lncRNA upstream 195646 15401446 ~ 15401762 (+) True G133330
TU157467 lncRNA upstream 212584 15378962 ~ 15384824 (+) True srp19
TU157456 lncRNA upstream 233437 15354461 ~ 15363971 (+) True G133307
TU157435 lncRNA upstream 253377 15343754 ~ 15344031 (+) True G133306
XR_004578565.1 lncRNA downstream 24114 15630453 ~ 15640958 (+) True LOC117597798
XR_004578566.1 lncRNA downstream 31579 15637918 ~ 15640958 (+) False LOC117597798
TU157835 lncRNA downstream 365521 15971860 ~ 15972109 (+) True G133617
TU157862 lncRNA downstream 405435 16011774 ~ 16018818 (+) False G133631
TU157869 lncRNA downstream 405435 16011774 ~ 16018783 (+) False G133631
XM_026925091.2 mRNA upstream 114712 15473676 ~ 15482696 (+) True LOC113533162
XM_026925097.2 mRNA upstream 114712 15473676 ~ 15482696 (+) False LOC113533162
XM_026929475.2 mRNA upstream 133525 15454048 ~ 15463883 (+) True LOC113535909
XM_034306822.1 mRNA upstream 144665 15442500 ~ 15452743 (+) True csgalnact1b
XM_026925285.2 mRNA upstream 144665 15443927 ~ 15452743 (+) False csgalnact1b
XM_026941200.2 mRNA downstream 293239 15899578 ~ 15905498 (+) True prxl2c
XM_034306763.1 mRNA downstream 301190 15907529 ~ 15920012 (+) True cdc14b
XM_026921411.2 mRNA downstream 301191 15907530 ~ 15920012 (+) False cdc14b
XM_034306765.1 mRNA downstream 301191 15907530 ~ 15917703 (+) False cdc14b
XM_026921429.2 mRNA downstream 301192 15907531 ~ 15920012 (+) False cdc14b
trnae-cuc_19 other upstream 617504 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 1273958 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 1889858 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 2227789 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 2533286 13064050 ~ 13064122 (+) True trnaf-gaa_25
TU157849 other downstream 395722 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 395722 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 796409 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 973918 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 974114 16580453 ~ 16594403 (+) False mtmr3

Expression Profile