Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU157869 |
| length | 751 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 2 |
| gene id | G133631 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 16002061 ~ 16018818 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU157835 | lncRNA | upstream | 39665 | 15971860 ~ 15972109 (+) | True | G133617 |
| XR_004578565.1 | lncRNA | upstream | 370816 | 15630453 ~ 15640958 (+) | True | LOC117597798 |
| XR_004578566.1 | lncRNA | upstream | 370816 | 15637918 ~ 15640958 (+) | False | LOC117597798 |
| TU157574 | lncRNA | upstream | 405435 | 15597408 ~ 15606339 (+) | True | G133386 |
| TU157510 | lncRNA | upstream | 585402 | 15425189 ~ 15426372 (+) | True | G133342 |
| TU157873 | lncRNA | downstream | 24057 | 16042840 ~ 16043039 (+) | True | G133635 |
| TU157977 | lncRNA | downstream | 145903 | 16164686 ~ 16170597 (+) | True | G133721 |
| TU157979 | lncRNA | downstream | 152402 | 16171185 ~ 16171500 (+) | True | G133722 |
| TU157981 | lncRNA | downstream | 153507 | 16172290 ~ 16172533 (+) | True | G133724 |
| TU158107 | lncRNA | downstream | 311797 | 16330580 ~ 16362249 (+) | True | G133842 |
| XM_034306613.1 | mRNA | upstream | 875 | 16005482 ~ 16010899 (+) | True | LOC117597822 |
| XM_026915243.2 | mRNA | upstream | 8463 | 15996325 ~ 16003311 (+) | True | smyd1b |
| XM_026915252.2 | mRNA | upstream | 8463 | 15996326 ~ 16003311 (+) | False | smyd1b |
| XM_026926150.2 | mRNA | upstream | 84128 | 15923290 ~ 15927646 (+) | True | znf367 |
| XM_034306764.1 | mRNA | upstream | 91762 | 15908661 ~ 15920012 (+) | False | cdc14b |
| XM_026928384.2 | mRNA | downstream | 5589 | 16024372 ~ 16029359 (+) | False | znf366 |
| XM_026928393.2 | mRNA | downstream | 5699 | 16024482 ~ 16029359 (+) | True | znf366 |
| XM_026928403.2 | mRNA | downstream | 6288 | 16025071 ~ 16029359 (+) | False | znf366 |
| XM_026927175.2 | mRNA | downstream | 15719 | 16034502 ~ 16042147 (+) | True | mrps27 |
| XM_026930126.2 | mRNA | downstream | 36137 | 16054920 ~ 16059663 (+) | True | ptger4a |
| TU157849 | other | upstream | 170 | 16002061 ~ 16011604 (+) | False | G133631 |
| trnae-cuc_19 | other | upstream | 1031870 | 14979833 ~ 14979904 (+) | True | trnae-cuc_19 |
| TU156645 | other | upstream | 1688324 | 14322172 ~ 14323450 (+) | True | G132595 |
| TU156117 | other | upstream | 2304224 | 13705256 ~ 13707550 (+) | False | LOC113527348 |
| trnae-cuc_18 | other | upstream | 2642155 | 13369548 ~ 13369619 (+) | True | trnae-cuc_18 |
| XR_004578524.1 | other | downstream | 383965 | 16402748 ~ 16419509 (+) | False | si:ch211-166a6.5 |
| TU158258 | other | downstream | 561474 | 16580257 ~ 16594403 (+) | False | mtmr3 |
| TU158254 | other | downstream | 561670 | 16580453 ~ 16594403 (+) | False | mtmr3 |
| TU158256 | other | downstream | 561670 | 16580453 ~ 16594403 (+) | False | mtmr3 |
| TU158261 | other | downstream | 561670 | 16580453 ~ 16600585 (+) | False | mtmr3 |
