RNA id: TU157977


Basic Information

Item Value
RNA id TU157977
length 298
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G133721
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16164686 ~ 16170597 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagggaagcaactccaaccccacagaTGGTTTtaggatggcttaaacactgactgagtGAGTGagtgatggctatctctataagtgattgggaactagtaatctggctcagtgtaaggtgacttgagcaaccccatccccaccctgatatcttttatagctcccacagaagaaaaaagagcacagtgccaTATGGCACTTAAAacaaaggaacagatgtaatttgtaaatgtttcagctgtgcttagtgagaaaggagagagaaaaacatctttaaatacaaactatagcccattgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157873 lncRNA upstream 121647 16042840 ~ 16043039 (+) True G133635
TU157862 lncRNA upstream 145868 16011774 ~ 16018818 (+) False G133631
TU157869 lncRNA upstream 145903 16011774 ~ 16018783 (+) False G133631
TU157835 lncRNA upstream 192577 15971860 ~ 15972109 (+) True G133617
XR_004578565.1 lncRNA upstream 523728 15630453 ~ 15640958 (+) True LOC117597798
TU157979 lncRNA downstream 588 16171185 ~ 16171500 (+) True G133722
TU157981 lncRNA downstream 1693 16172290 ~ 16172533 (+) True G133724
TU158107 lncRNA downstream 159983 16330580 ~ 16362249 (+) True G133842
TU158165 lncRNA downstream 268669 16439266 ~ 16440523 (+) True G133890
TU158260 lncRNA downstream 409856 16580453 ~ 16598026 (+) False mtmr3
XM_026921706.2 mRNA upstream 6200 16128186 ~ 16158486 (+) True dpysl2a
XM_034306811.1 mRNA upstream 6200 16137562 ~ 16158486 (+) False dpysl2a
XM_026918883.2 mRNA upstream 40109 16110372 ~ 16124577 (+) True bnip3la
XM_034306612.1 mRNA upstream 79578 16072774 ~ 16085108 (+) True loxhd1a
XM_026916314.2 mRNA upstream 79578 16080125 ~ 16085108 (+) False loxhd1a
XM_026910718.2 mRNA downstream 54017 16224614 ~ 16231225 (+) True tmem230b
XM_026910773.2 mRNA downstream 61504 16232101 ~ 16270087 (+) True igsf9b
XM_026910774.2 mRNA downstream 61504 16232101 ~ 16270087 (+) False igsf9b
XM_034306990.1 mRNA downstream 61504 16232101 ~ 16270087 (+) False igsf9b
XM_026910775.2 mRNA downstream 61504 16232101 ~ 16268600 (+) False igsf9b
TU157866 other upstream 145903 16002061 ~ 16018783 (+) True G133631
TU157849 other upstream 153082 16002061 ~ 16011604 (+) False G133631
trnae-cuc_19 other upstream 1184782 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 1841236 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 2457136 13705256 ~ 13707550 (+) False LOC113527348
XR_004578524.1 other downstream 232151 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 409660 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 409856 16580453 ~ 16594403 (+) False mtmr3
TU158256 other downstream 409856 16580453 ~ 16594403 (+) False mtmr3
TU158261 other downstream 409856 16580453 ~ 16600585 (+) False mtmr3

Expression Profile