Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU157979 |
| length | 316 |
| lncRNA type | inter_gene |
| GC content | 0.49 |
| exon number | 1 |
| gene id | G133722 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 16171185 ~ 16171500 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU157977 | lncRNA | upstream | 588 | 16164686 ~ 16170597 (+) | True | G133721 |
| TU157873 | lncRNA | upstream | 128146 | 16042840 ~ 16043039 (+) | True | G133635 |
| TU157862 | lncRNA | upstream | 152367 | 16011774 ~ 16018818 (+) | False | G133631 |
| TU157869 | lncRNA | upstream | 152402 | 16011774 ~ 16018783 (+) | False | G133631 |
| TU157835 | lncRNA | upstream | 199076 | 15971860 ~ 15972109 (+) | True | G133617 |
| TU157981 | lncRNA | downstream | 790 | 16172290 ~ 16172533 (+) | True | G133724 |
| TU158107 | lncRNA | downstream | 159080 | 16330580 ~ 16362249 (+) | True | G133842 |
| TU158165 | lncRNA | downstream | 267766 | 16439266 ~ 16440523 (+) | True | G133890 |
| TU158260 | lncRNA | downstream | 408953 | 16580453 ~ 16598026 (+) | False | mtmr3 |
| XR_004578591.1 | lncRNA | downstream | 471990 | 16643490 ~ 16663314 (+) | True | LOC117597830 |
| XM_026921706.2 | mRNA | upstream | 12699 | 16128186 ~ 16158486 (+) | True | dpysl2a |
| XM_034306811.1 | mRNA | upstream | 12699 | 16137562 ~ 16158486 (+) | False | dpysl2a |
| XM_026918883.2 | mRNA | upstream | 46608 | 16110372 ~ 16124577 (+) | True | bnip3la |
| XM_034306612.1 | mRNA | upstream | 86077 | 16072774 ~ 16085108 (+) | True | loxhd1a |
| XM_026910718.2 | mRNA | downstream | 53114 | 16224614 ~ 16231225 (+) | True | tmem230b |
| XM_026910773.2 | mRNA | downstream | 60601 | 16232101 ~ 16270087 (+) | True | igsf9b |
| XM_026910774.2 | mRNA | downstream | 60601 | 16232101 ~ 16270087 (+) | False | igsf9b |
| XM_034306990.1 | mRNA | downstream | 60601 | 16232101 ~ 16270087 (+) | False | igsf9b |
| XM_026910775.2 | mRNA | downstream | 60601 | 16232101 ~ 16268600 (+) | False | igsf9b |
| TU157866 | other | upstream | 152402 | 16002061 ~ 16018783 (+) | True | G133631 |
| TU157849 | other | upstream | 159581 | 16002061 ~ 16011604 (+) | False | G133631 |
| trnae-cuc_19 | other | upstream | 1191281 | 14979833 ~ 14979904 (+) | True | trnae-cuc_19 |
| TU156645 | other | upstream | 1847735 | 14322172 ~ 14323450 (+) | True | G132595 |
| TU156117 | other | upstream | 2463635 | 13705256 ~ 13707550 (+) | False | LOC113527348 |
| XR_004578524.1 | other | downstream | 231248 | 16402748 ~ 16419509 (+) | False | si:ch211-166a6.5 |
| TU158258 | other | downstream | 408757 | 16580257 ~ 16594403 (+) | False | mtmr3 |
| TU158254 | other | downstream | 408953 | 16580453 ~ 16594403 (+) | False | mtmr3 |
| TU158256 | other | downstream | 408953 | 16580453 ~ 16594403 (+) | False | mtmr3 |
| TU158261 | other | downstream | 408953 | 16580453 ~ 16600585 (+) | False | mtmr3 |
