RNA id: XM_026910755.2


Basic Information

Item Value
RNA id XM_026910755.2
length 1814
RNA type mRNA
GC content 0.43
exon number 12
gene id sept5a
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16355696 ~ 16371741 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGCCCGGCCTGAGCGCTGAGCATCTGAACCTGGacagcggagagagagagagagagagagagagagagaggaggatgaCAGCTAACACGCGATACAGGAGCCGGCTCATTAAAAGCGAGGATAGCGAGgATAAGCAGTATGTCGGCTTTGCAACGCTCCCTAACCAGGTCCACAGGAAGTCTGTCAAGAAAGGCTTTGATTTCACGCTAATGGTAGCAGgtgaATCTGGCTTGGGCAAGTCTACTCTAGTAAACAGCCTTTTCCTCACAGACCTCTATAAGGACAGAAAACTACTAAATGCAGAAGAGCGTATTAATCAGACAGTGGAGATCACCAAACACACCGTGGATATTGAAGAGAagggtgtcaaactcaaacTCACCATTGTAGACACACCAGGGTTTGGAGACGCTGTAAACAATAATGAGTGttggAAGCCCATCACCGACTACATTGATCAGCAGTTTGAGCAATATTTCAGGGATGAAAGTGGACTCAACAGGAAGAACATATTGGATAACCGAGTGCACTGCTGTCTTTATTTCATACCACCATTTGGACATGGtTTGAGGCCAGTGGATGTGGAGTTCATGAAAGCACTGCATGAGAAAGTGAACATTATTCCTCTCATTGCCAAAGCGGACTGTCTCACTCCAAGTGAGATAAAGAAGCTAAAGGACCGGgtacgaGATGAGATTGAGCGCTTTGGGATTAAAGTGTACCAGTTTCCTGAGTGTGACtctgatgaggatgaggagttTAAACAGATGGACAAAGAGCTGAAGGAGTGtactccctttgctgttattggTAGTAATACAGTGGTGGAAGCAAGAGGTCAAAGAGTGCGAGGTCGCCTCTACCCTTGGGGCATTgttgaagTGGAGAACCAGTCCCACTGTGACTTTGTGAAGTTGAGGAACATGCTGATTCGCTCTCACATGCATGACCTGAAAGATGTGACTTGCGATGTACACTATGAGAACTACAGAGCCCAGTGTATACAGGAGATGACCagtaaaCTTACACAGGACAACCGCATGGACAGTCCTATTCCCATTCTGCCGCTGCCTACTCCGGACGCAGAAACAGAGCGACTCATCAAGATGAAGGATGAAGAGcTGAAAAGAATGCAAGAGATGCTGCAGAAGATGCAGCAACAGATGCACGAGAAAGACCAGTGATGATCACACACCGAGACACACGTACACATATGCAAACATGCACTTATCAAGAAATGTACACTTCATATCTTATACTGTATTCTTTCACATGACTGATAATGAAAGTGGTCATGTATGTATTCTAATTATGGCGTATCCTTCAGACAGCGACACACTCGATGAcaaactatactgtatatttgcaaAACAATTTGCTTGGTGCTTTGGAGCTCTTACCTACCAAGTACAAATGTGAAGCATCTATTTAATACTTCTTGTGTTTATGCCCGTGTGAGTATAGCTAACAATGGtaatattatgtataattaatttaaattaaacttaCTTTTAGATGTATCTAATTTATATGTACTTGATTTTAATGCTTAGCTAGAATGTGCATAAATTGTTTTGTAATGCCATTTTAGCCAAAGTGTTGGTTTGAATCTGAGCTCtgactgtttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtaaatgagtgtgtaaatgaataTGTGAAACTACACTTTTTCTTTAACTGCAGACTAGGATTTTTAGAGTGCTAGCTCTCAGTGAGTGTGGAGTTACCATGCAGGttactgttataaataaatatgcttaATTCaga

Function

GO:

id name namespace
GO:0017157 regulation of exocytosis biological_process
GO:0007049 cell cycle biological_process
GO:0005886 plasma membrane cellular_component
GO:0031105 septin complex cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157981 lncRNA upstream 183163 16172290 ~ 16172533 (+) True G133724
TU157979 lncRNA upstream 184196 16171185 ~ 16171500 (+) True G133722
TU157977 lncRNA upstream 185099 16164686 ~ 16170597 (+) True G133721
TU157873 lncRNA upstream 312657 16042840 ~ 16043039 (+) True G133635
TU157869 lncRNA upstream 336913 16011774 ~ 16018783 (+) False G133631
TU158165 lncRNA downstream 67525 16439266 ~ 16440523 (+) True G133890
TU158260 lncRNA downstream 208712 16580453 ~ 16598026 (+) False mtmr3
XR_004578591.1 lncRNA downstream 271749 16643490 ~ 16663314 (+) True LOC117597830
XR_004578592.1 lncRNA downstream 271749 16643490 ~ 16663314 (+) False LOC117597830
XR_004578590.1 lncRNA downstream 271749 16643490 ~ 16663314 (+) False LOC117597830
XM_026910734.2 mRNA upstream 2139 16328742 ~ 16353557 (+) True zgc:63587
XM_026910720.2 mRNA upstream 40386 16305827 ~ 16315310 (+) True cdc45
XM_026910764.2 mRNA upstream 54025 16294460 ~ 16301671 (+) True ciao1
XM_034306990.1 mRNA upstream 85609 16232101 ~ 16270087 (+) False igsf9b
XM_026910756.2 mRNA downstream 216 16371957 ~ 16375128 (+) True gp1bb
XM_026910767.2 mRNA downstream 4404 16376145 ~ 16397625 (+) True dhx37
XM_026910751.2 mRNA downstream 31007 16402748 ~ 16419509 (+) True si:ch211-166a6.5
XM_026910758.2 mRNA downstream 51992 16423733 ~ 16439084 (+) False rad9b
XM_026910757.2 mRNA downstream 51993 16423734 ~ 16439084 (+) False rad9b
TU157866 other upstream 336913 16002061 ~ 16018783 (+) True G133631
TU157849 other upstream 344092 16002061 ~ 16011604 (+) False G133631
trnae-cuc_19 other upstream 1375792 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 2032246 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 2648146 13705256 ~ 13707550 (+) False LOC113527348
XR_004578524.1 other downstream 31007 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 208516 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 208712 16580453 ~ 16594403 (+) False mtmr3
TU158256 other downstream 208712 16580453 ~ 16594403 (+) False mtmr3
TU158261 other downstream 208712 16580453 ~ 16600585 (+) False mtmr3

Expression Profile