RNA id: XM_026910756.2


Basic Information

Item Value
RNA id XM_026910756.2
length 1697
RNA type mRNA
GC content 0.43
exon number 3
gene id gp1bb
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16371957 ~ 16375128 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgtgtgtgtgtaggcaacTTTATCAGTGTGACCCAGCTGTGTCTCTAGAACACTTGCTGTTATTGCAAGAGCAGACACTGTCCCTCTTTTGGGCCCCTGTTTCACGGAGAAGACATTTATATACTGTGTGTGCtggtatgaagtgtgtgttatttgccCTACTGGTTCTCGTCTGTGAGCTGGGAGCTGATGTAGGCAAAGCTGATGCTGTATGTCCACAGGGCTGTTTCTGCACAGCTGCTGTGGTGGACTGTAGCAGTCGTGGACTCACAACTGCCACACTGCCTTCATCTTTCCCCGTGAGCACCACTGAGCTCCAGCTCCATGATAACCACCTCACAGCACTGCCCACTGGACTGCTGGACGGCATGCAGGCGCTGCAACTGGTCACGCTGCATGGGAACCCGTGGGAGTGTGACTGTGCCGTGCTCTATCTGAGGGGATGGCTTTTAAAACAGAACAATGATGCTTTGATAAGAAATGTGAGCTGCAATTCTCCTCCTGGCCTGCAGGGGAGACTGGTGGCCTACCTATCAGAGGAGGAGGTGCTTAACACCTGTAATTATTGGCTGTGTGATCTGGCCTTGGCCTCACAGATCAGCTTGTTTGTCTTTATAGTGGTGCAAGGAATCCTCCTTGCTGTGGTGGTCTACTTCCTCCGCCGTTTCAACCAGCTGGGCTATGATGCACAGCGAGCAGCTGCAGAAAGCTTTCACAGCTGAGACCAACAGCATCTCACAAATCAAAGAGTGTGTCTCACTAAACAACAAAAGCTCCTGATGTGCAAGGCTGAGGAACCTCGTTTCACACCACAATGGCTGTCTTTCACTACTGTTTTAACTGCCCTCATCAACGTCTTGTCACTATTTCCATTGCGAAACCTTGTTGCTGTCTTAAGGAATGTAACCTTTATCCACTCAGGTGTAGGGTTGTAGTATAAGCCATGAGAGGAGGGATTAGGGCAACATAATCTGAGACTTCATGTGCTGAATATGCTGAGAAGGTATTCTGATCAGCCACAACTTCTATAATTAATGTGGTCTCGCAGgaatttaatttttcacatttggaAGATCCATGCATGCCAAAGTCATCCTGTCTGCTTTCTGGGTTTCATTCTCTCtcaaaatattaatacaataattCTGTTAAAATTGTCAACCAATCAAAATAGGCTTCAAATTTTGACTATTAATTCTAGTTACTCCAATGCTAAATTCTCAGAAGAGCAGTAACTAAAGAGAAACTCCTCCCACTACCGTTTTAAGCAAACATTACAGCATCTGTACACATTTGCTTTTCATATTCACAGGTACATTAAAACAATTTGGGGTCCCCAAGTGTTCAGAACCAGCGTTGCATACACTATAGATAACGAAGAGGGGAAGTTGATGACAGCATGCTGAAAACAGTAATGAAATGGGCCAGTGAGAGACTTGAAAAAGGTGCACATTACATCCTGCTTTACTTTACTAGTTATGGAATATGAAATAGCATCTGAAAGATTTATGCCAGTCAGCAAACTTTGGTGAAAACTATTAAATCACCCCATATGCAGTGTTTGCATTCACACTgcatttgtactgtatattttttcatgaaatatatTTGCAATGGAAGCTCTTAAAAaggttttattctttcttttttttttttatacaataaaattattttgtaatttggGTCTTTTA

Function

GO: NA

KEGG:

id description
K06262 GP1BB, CD42c; platelet glycoprotein Ib beta chain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158107 lncRNA upstream 9708 16330580 ~ 16362249 (+) True G133842
TU157981 lncRNA upstream 199424 16172290 ~ 16172533 (+) True G133724
TU157979 lncRNA upstream 200457 16171185 ~ 16171500 (+) True G133722
TU157977 lncRNA upstream 201360 16164686 ~ 16170597 (+) True G133721
TU157873 lncRNA upstream 328918 16042840 ~ 16043039 (+) True G133635
TU158165 lncRNA downstream 64138 16439266 ~ 16440523 (+) True G133890
TU158260 lncRNA downstream 205325 16580453 ~ 16598026 (+) False mtmr3
XR_004578591.1 lncRNA downstream 268362 16643490 ~ 16663314 (+) True LOC117597830
XR_004578592.1 lncRNA downstream 268362 16643490 ~ 16663314 (+) False LOC117597830
XR_004578590.1 lncRNA downstream 268362 16643490 ~ 16663314 (+) False LOC117597830
XM_026910755.2 mRNA upstream 216 16355696 ~ 16371741 (+) False sept5a
XM_026910754.2 mRNA upstream 216 16363170 ~ 16371741 (+) True sept5a
XM_026910734.2 mRNA upstream 18400 16328742 ~ 16353557 (+) True zgc:63587
XM_026910720.2 mRNA upstream 56647 16305827 ~ 16315310 (+) True cdc45
XM_026910764.2 mRNA upstream 70286 16294460 ~ 16301671 (+) True ciao1
XM_026910767.2 mRNA downstream 1017 16376145 ~ 16397625 (+) True dhx37
XM_026910751.2 mRNA downstream 27620 16402748 ~ 16419509 (+) True si:ch211-166a6.5
XM_026910758.2 mRNA downstream 48605 16423733 ~ 16439084 (+) False rad9b
XM_026910757.2 mRNA downstream 48606 16423734 ~ 16439084 (+) False rad9b
XM_026910759.2 mRNA downstream 48607 16423735 ~ 16439084 (+) False rad9b
TU157866 other upstream 353174 16002061 ~ 16018783 (+) True G133631
TU157849 other upstream 360353 16002061 ~ 16011604 (+) False G133631
trnae-cuc_19 other upstream 1392053 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 2048507 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 2664407 13705256 ~ 13707550 (+) False LOC113527348
XR_004578524.1 other downstream 27620 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 205129 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 205325 16580453 ~ 16594403 (+) False mtmr3
TU158256 other downstream 205325 16580453 ~ 16594403 (+) False mtmr3
TU158261 other downstream 205325 16580453 ~ 16600585 (+) False mtmr3

Expression Profile