RNA id: XM_026910775.2


Basic Information

Item Value
RNA id XM_026910775.2
length 6033
RNA type mRNA
GC content 0.49
exon number 20
gene id igsf9b
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16232101 ~ 16270087 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGACGCTGTTCATTTAATTCACATGGCTTATGTATCTCCTGTAGGTAGCTTAAACTTTTAGAAAGCAGCTATATCCATTCTCCAGCTGCTCGACCGGAGGCTTTCAGAGAGCTTCAGTGATTTTAGTCTACTATAAACTTGTAAGAGAAGAAAAGGGGAAGTTGGAGCGCGAGCGCGCGCTTGTGCAGCCTGCAGCGAGTTGCGCTTCGCGTGGCGCATTTTGGACAACCTGTAGCAGCAGGTAACGTCCTGTGCGCTCAGAGGGAGAGGAAAAGCATTGCCTCGGGCAATTCCTGTGAACAAAACTTGTGCTCCTCTGCAAACACTTCTGATGGTTCTACAGCAGCACCTTATTCAACTCTGCACCTGATACTGGAGGACACTGGCGATCATGTAAAGCTCACAGAGACCAGAGCCACGGGTTATCTCAGCTCAGCTTGCATAACCGtcacacaaatatttttgttttgtgtagaAAACTATACTGACCAGGACCATCACATATTCGGAAGGAACTTCCCCTGGGTATACGAAAAAGGAAAAGTGTTCCATGGAGTGATGTCTCACAGAAGGTGCAGAGCCTCAGaaatgtgtgatggtgtgtgagcGTTGGCCATGGGACAGAAGAAACTCTGGCTTCTGTGTGTCACTTTTGCTTCCTTCCTCTATCTTACAAATCCCTCAGTGAGTGCTGAAACCGTGGTGAAAGGAAGAGTAGGGGGGACTGTAGAACTGGGCTGCACCCTCACTTCATCGGATGGGGTCATGACACCGAATCTATTCCCTCTGCACGTGGTTGAGTGGGTGCGGCTGGGCTACAATGTCCCCATTCTTATTAAATTTGGAGCTTACACGCCACGTGTGCACCCAAATTATAAAGGCCGTGTGTCTCTGACACGGGGAGCATCTCTAGTGGTTGATGGCTTGACTCTGGAGGATGAAGGCTGGTTTGAATGTCGCATACTTTTGCTGGACAGAACTGCTGATGAGTTCAGAAATGGCACTTGGActttcctgtcaatcacagCTCCTCCAGTGTTTATAAAGATACCCCCTTCCTTTGTGGAGGTGCTTTTGGGGGAATCTCTCAACCTCAGCTGTGGTGCAGTTGGCAACCCAAAACCAGCAGTCACCTGGAGAAAAGAGGATAACACAGGGGAGAAAGAAGACAAGATTCAGGTAATCAATGGAACCTTATCTTTGGTCAAGGTTACCAGGGAAACAGCAGGAATGTACAAGTGTCACGTATCCAACTCTGAGGGAAACTTGACTCACATTACCCAGCTACAGGTTAAAGgtcCTCCAGTCATTGTTATTCCCCCTGTGGACACTACCATGAACATGTCCGGGGATGGAGTTCTTCAGTGCCATGCTGATGCATACCCATCTAACCTCACGTATGAGTGGCAGAAAGAAGGACAAAATGTCTATAATGTTGAATCTCTGAAGTCTCGAGTTAAGGTCCTGGTGGATGGTACTCTGCTCATTCCTGAGTTAATCCCTGAAGACTCAGGAAACTACACCTGCATTCCCTCCAATGGGTTACTGACTCCACCCTCTGCTTCTGCTTACCTCAAAGTGAAATATCCTGCACGGGTGATGCGGATGCCTAGGGAGACCTACCTCCCTGCTGGCATGGGTGGAACAATTGTGTGCCCAGTTCAAGCCGAGCCTCCAATGCTGTTTGTCAACTGGACCAAAGATGGTGCCTCACTGGACCTACACCAGCACCCAGGTTGGATGATAAACTCAGAAGGCTCCGTGTTCATAGCCATAGCCAATGATGATTCAGTAGGCATGTACACCTGCACTGCTTACAACAGCTTTGGGACTATGGGTCAGTCTGAACCCACCAGAGTAATTCTGAAGGATCCCCCATTGTTTAGGGTGTCCCCCAGGGCTGAGTACCTGCAGGAAGTTGGTAGAAAGCTAATCATTCCCTGCCAAGCACATGGGGACCCACCACTTAATATCACCTGGACCAAGGTTAGGACTACGCCTAGCTCTCCATTTACTGTTTTGTCCAATGGTTCACTGGTTCTGCATCCACTCAGCAAAAACCATCAAGGGGCATGGGAGTGTCATGCTACCAACTCCGTAGCCACAGTCAGTAAAGGCACTGTGGTTCTAGTATTAGgCACAAGTCCCCATGCTGTGACTGCAGTGTCTATAGATCCAGGCATCGACAATGCCAATGTATCCTGGGAGCCTGGTTTTAATGGAGGATATACCCAGAAGTTCAGCATTTGGGTGAAGCCCACTAATAGAGGGAAACATGAGTGGACCTCACTCCCAGTCCCCATATCTGAATCCAGCCTCCTTGTGACAGGTCTCCAGCCTGCCACTAGTTACCAGTTCAGCATCTTGCCCCAGAACAAGCTGGGCTCTGGCCCATTCAGTGAGATTGTCACCATCATGACCCTGCCTCCTCCAACAGATCCACCTACTGTAGTAACCAATTTAGCAGCACTACTTGCTCCCACCTCATTGTCAGTAAATTACACAGCAGTGGGTGTGCTGCTGCAGTGGCTGCCGCCCCCTGCTCAGTCTCCACTGATCACAGCCTTCATGCTCCAGGCAAGGCGGGAGAAGGGCGAATGGGTTACACTTGAGAGAGAAATCAAAGTCAATGCCACAGAAATACTTGTCCAAGGACTGACAAGAGACTCCTGCTATGAGCTGCGGCTACTGTCATATGGAGCTAGAATAGTCAGTGAACCCAGTGAATCAGTCAATATCACCACTAAAGGTATGGAGGTATATCCAGCTCCATCCAGCTTGTTGACTTTTGTTACTCAGCCCCTGATGGCTGGtgtgatggcaggtgtgtgctTCCTATTTGTGACTATCATTCTTTCAGTGGTGACAGCATGTGGTATGAACCACAGGAGGGAGCAGCGCCGCAGGAAGAGACAAGATGTTATCTCTAATGCCTTCCAGAAGACCCGATCTCTACAAGCCAGGTTGCCTGATAACAGTCCGAACAGCATACTGAAGATGAAGTTATGCCCTCCACTTAACTTCCTTCCCAATTCCTCATCTTCTGACCGTTCAGACCACTCATCCTTTGACAAGAGCAGCTGCGGCGAGTATCAGGATCAGAAGAAGCAACTTCTCCCCTCATCATCGCCACCACCATGCTACACTCTCTTTGAGAGCCACCTCGGCGGTTCCCCATCCTCATTGTTTGCCATTGAGTCTATATCCAGAGGGCCCGATGGCCGTTTCATTGCCCAACCATATTTAGAGGATTCTATAGCAGtgcacattaaaacaaaaaaagaattccCTCAGTCCCCAAGACAAGATAATGGTAAAGGAAGCAAGAGTAGCTCTTTCAGAGACTCTCCAAAATGCTGTTCAGTTAGGTCAGAGAAGAGAGTGATAAAAGATCCCCCAACAAGAGAGCAGGACAGCCCCAGCAAATGTCTAACATTGATGAAAGAGCAAGATGAGCTGAAAAGCTTCACAACCAGCCACAGAGCACAAGAGTATGAGAAGGAGCAGAGGCAGACTAAGTCAGAAAGTCCTATTAGAAGATGGGCAGGGGTCGAGTTGGATGAACCCATCTCGAAACCTCAGGACATTCCTCTCCGGCAGAAAGCCCAGAGATCTAGCAGCCTGGCCCAACAAATTTCAGAATATCGGAGGGGTTGTTATTTTGGCAACACCAGCAGCCCCATGGAGAGGCTACTCACCTCCCCCTCCACATGCATTCAATGGGATATCAGCCCTGTGACCTCTCCTACCAGCCAGGTCCCTGCTCTGAGCCTCTCAGAGGGGATCACACCTCACTGCATGCTTCCAGACACACCACACAGAGGTTTGGAGGGTGTGGAAGGCTCAGCAGCAGAAGACATATCACATTCACGAGTTACACAGTACACTTCCCTCTCAATCCTTTCCCACCACAGGGACAGTCCTTGCTGTGAGTCAGACATAAGTAAGGCACAGGCCATTTGCCCAGAGAGACCAATAGACAGGGAGCTTTCCAGCACAAGGATTTTAACAGAGGATCAGGAAAGGGAAATAAAGACACAGTCAAATGTCTCTATGTCATTTGAGAGAACACAGCACTCTACTGCTGAAAGGGGGAAAGAAGCCAGACCTGATGGACACTTCCCCAAACTCAGCACTAACGTGAGCCACAGTTGTATTGGTAGTTCCACCATTACCTATGATAATCAGAAGAGTGATAGTGAGATCAAAACTGGAGATAAGCCAAGCTCCTCATCTTTGAGGCCTGAAGAAGAGAAGGAGGGCATTAGGGCACGCTCTCGCAAGAGTGATAAGTGTGTCTTCAGTGTTAGCCCCAATTACATTTCTCCTCTGCCCCTTCTTGAAAATGAAGTTGAAAGTGATCAGTCTAATTTCTCCATCAGATTATCTGAATCACTGAAAGCCAAGATTGTGTCCCATCCTGACAGGATGTCTCCTCTGCAACCAAGCACTATCCTGGAGTATTTGAGCCTGCCAGGCTTTGTtgagatgagtgtagatgaacCTACTGAGGAGTGTCAACTGGCAGAATGTACTTGGCTCAGCACCAAACAAGCAGATGGGACTCTCTTAAGAGGTGAACCTGATGTGGTCCCTAAGAACTGGGAGAATCAAGGTCATTACGACATAGAAGAGAATGATGATCACCAAAGCAGATTTTTGGTGGATCTTAAAATACCCATTATTCCTGTAGGAAGTTCTATACCTGAAAATGTAAGTAGTTCTAAACCCTGTCTAGATTTGGCACATGGAAATACAAGTATAAACCCAGGGTCCTCAGAGACAAAATGTATTTCAACACAGTACTTAGCTAATGAAGGAAGAAGTTCCCAGCCATTGTTCTCTTACAAAAGCCTTGGTTCTGATAAACCTACACATTTGAGCCCAGCACAGACTCCAGTGAGTACTAAAGTAATCTATAATATCCCTTATCAAAGCGAGAGTATGGAAGAATCTTTATCAGAGCACACTCAGTGGTGTCAACCTCATAATAAGAGGACTAACTATGTAAGTACACGAATCTCTCAGGCTCCTGTGCCTTTTATGAAGAAATCAATCAGCATTGGTCCATGTAGGACTCTCTCAGGTATGGGGGAGCCCCATCCATTCCTTAGGAAATCCAATAGTTTAGGATCACAGAAGTGGAAGCATCATCAAAGCTCCAGGACATATGTCTCTAATAACTGTTACAAAGATGAGCTACCCCATCTTAGTGTAAAAGACAAGTCCTACAATTCAGGTTGCACACCTGCAAATTCTTACTTGAGGTCCGGTCCCTCAGGGCAAGGGACAGGGAGTGCCAAATCTTACAGCTATGGCCTGGAGAGACCTTGCTATAGTGAGAGACCATACATGACTCCTTCATCTCTCATGCATGCACATGGCCCGTCAGTCCAAGATCCACCAAAACTTGTAGAACCTTATAGACGAGAGTCAGATCCACGTCGACAAGCCACAGTCTTTCCAGAGTCTTTAAGGTGCCCACTGTCATATCAGGAGACCCTCAGGTTAGTCCAGCACAGGTATGTCCCCCAGGGTCCCCCTCGACCCCTTAGTGCACCCAGACTAGTTGCAAGGTGGGACCATCCTCATTCTGTGGACTCCAGAAAGAGATTTCAGAGGCCATTCTTGCCCAGGGGTTACAGCTGGCCCTCACCCCACCAAGCAGCTTTTCCCTCAGGGGAGATTCAGAGAGAACTGTATGGGGTGGTGGGTAAGAGCGAGGGCAGGGACAGTACCGGAGAGGGTGGTCGAGCCAGTTATGCCAGCCAAAGCAGTGGTAGGGGGAGTGTGGGGCCATTTGGGCACCTCCGCCAGTCCCTTTCCATCACTCCTACATTATTGAGCTCTCCTGAGACTACAGAGGAGAGTGAGAGGTGCAAGAGAGAATCTGACCTGCAAGAGCGAAGGTCAAAAAGGCCTTGACCTCCTGGAGGCCATGAAGATGCAGCAAGCAGGCAAGGGCCAAGGGAGGGAGCTGAAGCGTGATAGGCCCCTTACCAGCACTGGCCTCCAGGACCTGCAGGAGAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157981 lncRNA upstream 59568 16172290 ~ 16172533 (+) True G133724
TU157979 lncRNA upstream 60601 16171185 ~ 16171500 (+) True G133722
TU157977 lncRNA upstream 61504 16164686 ~ 16170597 (+) True G133721
TU157873 lncRNA upstream 189062 16042840 ~ 16043039 (+) True G133635
TU157869 lncRNA upstream 213318 16011774 ~ 16018783 (+) False G133631
TU158107 lncRNA downstream 61980 16330580 ~ 16362249 (+) True G133842
TU158165 lncRNA downstream 170666 16439266 ~ 16440523 (+) True G133890
TU158260 lncRNA downstream 311853 16580453 ~ 16598026 (+) False mtmr3
XR_004578591.1 lncRNA downstream 374890 16643490 ~ 16663314 (+) True LOC117597830
XR_004578592.1 lncRNA downstream 374890 16643490 ~ 16663314 (+) False LOC117597830
XM_026910718.2 mRNA upstream 876 16224614 ~ 16231225 (+) True tmem230b
XM_026921706.2 mRNA upstream 73615 16128186 ~ 16158486 (+) True dpysl2a
XM_034306811.1 mRNA upstream 73615 16137562 ~ 16158486 (+) False dpysl2a
XM_026918883.2 mRNA upstream 107524 16110372 ~ 16124577 (+) True bnip3la
XM_026916314.2 mRNA upstream 146993 16080125 ~ 16085108 (+) False loxhd1a
XM_026910764.2 mRNA downstream 25860 16294460 ~ 16301671 (+) True ciao1
XM_026910720.2 mRNA downstream 37227 16305827 ~ 16315310 (+) True cdc45
XM_026910734.2 mRNA downstream 60142 16328742 ~ 16353557 (+) True zgc:63587
XM_026910755.2 mRNA downstream 87096 16355696 ~ 16371741 (+) False sept5a
XM_026910754.2 mRNA downstream 94570 16363170 ~ 16371741 (+) True sept5a
TU157866 other upstream 213318 16002061 ~ 16018783 (+) True G133631
TU157849 other upstream 220497 16002061 ~ 16011604 (+) False G133631
trnae-cuc_19 other upstream 1252197 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 1908651 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 2524551 13705256 ~ 13707550 (+) False LOC113527348
XR_004578524.1 other downstream 134148 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 311657 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 311853 16580453 ~ 16594403 (+) False mtmr3
TU158256 other downstream 311853 16580453 ~ 16594403 (+) False mtmr3
TU158261 other downstream 311853 16580453 ~ 16600585 (+) False mtmr3

Expression Profile