RNA id: XM_034306612.1


Basic Information

Item Value
RNA id XM_034306612.1
length 4839
RNA type mRNA
GC content 0.44
exon number 28
gene id loxhd1a
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16072774 ~ 16085108 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGCCATGATGGGCGAGGTGGAGGCTGTGGCTGGTTCCTAGACAAAGTGGTGGTCAGAGAAGAAGGACAGGCTGAGTCTGAGGCTGTAGAGTTCCCATGTAATAGATGGCTTGACCGTAATGAGGATGATGGCCAGATTGTTCAAGAGTTAGTTCCATTTGCTGATGGACAAAAACTCTTTAAACTACTTTGAAACCGGCCGGGTTGATATCTTCACCATTGAGACTTTTGACATTGGACAAATTAACCGTCTGCTGATTGGCCACACCAACGAAGGCATGAGGGCAGGCTGGTTTCTGGACAGCGTACAGATCAAGGTGCCCAACCAGGGTAAACACTACATGTTCCCCAGCCATCGTTGGCTCTCTGAAGATGAGGCTGATGGCAAGACTGAAGTGGAGCTCTACCCAAGTGAAATACTTGATATTGAAAAATTAATAAACTATGAGGTTACTGTGGTAACGGGTGATGTTTGGGCTGGAGGAACCAATGCCAGTGTTTTCATCCAAATATATGGAGAGGAAGGAAAAACAGACCTTATCACCTTGAAAAGCAGGTCAAACAACTTTGAAAGAGGAACCACTGAAATATTCAAGATTGAAGCTAAAGACGTGGGAAATATCTTCAAAATCCGCATTGGCCATGATGGAACAGGAATTGGCTCTGGATGGTACTTAGAAAAGGTGGACTTGAAGTACTTGGTCATGGCCATGgtgaggaaagagaagaaagaagacaagaagaaaaacaaaaagaagaaaaagaaggaggaagaagaggatgaggagggtGAGGAAGTGATGCAGGAAGTAGTGAAGACACTTACCTTTCCCTGTGATCGTTGGCTggctgaggatgaggaggatgggGAATTGATAGTGGAGCTTCTACCTGAGGACAATGAGGAGCTAGAAGAAAACACATATGAAGTCAGTGTCTTTACGGGGAACATGTGGGGTGCGGGAACCGATGCCAACGTTTACATCAATATCTATGGTGAGAATGGTGACACTGGGGAGCGTCCCCTGAAGAAATCTAACAACCTTAACAAATTTGAGCGTGGTCATgaagacattttcacaataaAAGCAGTTGAACTGGGGCCTTTGAAGAAGCTAAGGATCCATCATGATAACAGCCATGCCAACTCAGCCTGGTACCTGGACCGAGTTGAGATTATAGATACAAAAGATGACACCACGTACTACTTCCCCTGTAACCGCTGGTTGGCTGTTGATGAGGATGATGGCCAGATTGTCAGAGAGCTGGTGCCTGTGGATGAGGCTTTCATGAAGAAGAATGAGGATGAGGAAGGGTTAGGAGCCACCTTAGGGCTGGAGCAGAAAGcCATGTCAACAACATACACACTGAAGATTAAGACTGGGGAGAAGAAATATGCCGGAACAGATGCCAATGTGTTTGCAGTTCTTTATGGAGAGTATGATGATACAGGAATTATTAACCTGAAGGCCAGCAAAACTCACAAGAATAAGTTTGAACAAGGATTCATCGATGAGTTCATTGTGGAAGCTGTTAATCTTGGAGAGCTTAAAAGGATCAGAATTGGCCATGACAATGCTGGGGGTTCAGGTTGGTTTTTGGATTGGGTGGAGATTAATGCACCTTCTCAGGGTCTGAAACTCTGTTTCCCATGTGGCCGCTGGCTGGATAAGGGAGAAGATGATGGGGCATTAGCAAGAGATTTGTACCCAGCTGAACTACAGACTGAGGTGTACACTCCATTTGTACCCTATGAGATTAAAACCTTTACTAGTGATATCTTTGGAGCAGGAACGGATGCAGATGTCTTCATTGTTCTCTATGGTGAAAATGGAGTCTGCACTCACCAAAAGTATCTCTGTGTGAATAAGAGAGAAAGGCGCATGTACTTTGAGAGGGGAGCAGAGAACATGTTCATTGTGGAACTGGAAGATGTAGGCGATGTAATTGAGAAGATTCGCATTGGACATGACAACAGAGGCATAAACCCTGGGTGGCATCTTGACCGAGTGGAGATTAGAAGGCTTTTAAGGAAAGGAAAGGGATCTGAGACTACCATATTCCCATGTGAGAGATGGTTGGCAAAGTCTGAAGATGATGGCGAGACAGTGAGAGAGCTGGTGCCCTCAGACATCATCATAGAGAGGCTTCTAAGAGATGGCACTCTGAAATGCACTGAGACTGAAGTGGAAGATGCATTGGAAACTCACACATATGAAGTGTCTGTAAGAACAGGTGATATGTATGGAGCAGGTACAGATGCCAATGTGTTCCTGACCATCTATGGAGAACTTGGAGACACAGGAGAACGCAAACTCAGCAAATCAGAGACCAACAAAAATAAGTTTAAGAGAGGAGCAGTTGATAAATTCAGCATTGAGGCTGTGGACCTCGGGCAAGTTTTTAAGATCAAAATACGGCATGACAATTCTATGATAGGAGCGGACTGGTACCTAGAACAGGTGGAAATTGTGGATACAGACACAGAGGAAACCTCCATGTTCTTATGTGAAAGGTGGCtctcaaaaaagaaagaagataaaAGGATTGAGAGAACATTTTATGTCAAGGGATATGAAGGTGAAAGGAATCCCCAGAATTCTAAGCCAAGCCTAGACAGCAACatgaacaagaagaaaaagaagaaaaaatcagCAGCTGTAGAGGAGGGTGCTGTTATCCCATATCACTTTACGGTGTCGACAGGATCGGACCGTGATGCTAGTACTACCAGTCGGGTCTTTGTGATCATCATAGGAGCAAATGATCTTGAAACAGACAGACTCTGGCTCGACCTTCCTGAAGGAAAGAAATGCTTTGCTGCTGAAACTATGGAACACTTTGAATGTTATGGGTTGGATGTAGGAGAAATCAAAAGAGTCGAGtTAGGCCATAATGGTGCTACTCCAGAAAGCTGCTGGCTGGTGGAGGAGCTGGCCGTGGCAGTGCCTACCAAAGGCATCAAGTATATATTCCAGTGTAACTGCTGGCTTGCCAAGGATAGAGGGGATGGTCTCACATCAAGAATGTTCAATATACTTGATGCCATCACTATTAATATAATTCAAAAgGTTATCTATGAGATTACAGTTGTTACAGGAGACGTCCAGTATGCAGGGACAGACACCAACATATTTATAACTGTATTTGGGGCCAATGGGAGCACAGAAGAGATTTTGTTACCAAAGAATGAGGACAGGtttgagagagatcagaaggACACTTTTAATTTGGAGATAGATGACATTGCTCCACTTAAAAAGCTGAGGGTTCGCATCGATGGGACAGGATGCCGACCTGATTGGTTCCTTGACAAGATTATCATGCGAAACCCAATCACTGAGGAAGTGTCGGTTTTCACCTATGAGGACTGGCTATCCAAAACGAAAGGGCCAAAGAGGACAAAGGTCTGTGAGCTCCCTGCAGTGGTTGACGATGAGGAGATGGTGGAGAAAACCACCTATATCATTCAGGTTAAAACCAGTGACATTGCTGGTGCAGGCACAGATGCTAACGTGTTCATGATTGTGTTTGGGGAGAATGGGGACACAGGCACTCTAGCACTGAAAGAATGCAGCAACAGGAACAAATTTGAGCGCAATCAGGTGGATGTGTTCCGCTTTTCAGACATCCTCAGCCTGGGAGAGCTTTCCAAGATCCGAGTATGGCATGATAATAaggGTGTTGCTCCTGGTTGGCACTTAGAAAACATTGATGTAAAAGATGAGTTCATGAGCCAAACCTTTCGATTCCCTTGTGACCGCTGGCTGGCCAAAAGTGAGGATGATGGCCAGATTATTCGGGAACTGGCCTGTGCCAACAATGATATCCTGGACCTCAGTGACAAGACCAAATATGATATTGACATTACTACAGCCAACTATGAAGGTGCAGGGACAAAGGAGAATGTGTGCATAGTGCTTGAGGGGAAAAGAGCACGTTCGAAGGAGTTTATGATGGAAAATTCTTCAAAGAAAAGGAGATTTGTGTGGGGTACAACTGACTCATTTGAGTTTTCCTCCAAACATCTGGGAGATATTGTTAGCATCTCTTTGGGCCATAtaacaaaagataaaaaagtGAAGAATGAGGCTTACTGGCATGTTGAGGAGGTGGTGGTGACAGAACAAGAGCTGGGGAACAAGTACTTTTTCCATTGTGATGCCCAGATCCTTCTCAGTACGAAGAAAGGCGAGTTTGTGACATTTGAGTGCATTAAGTGCGTTGAGAGCTTCGCCAGCAAAGTGCGCAGCTTGGTTCCCGTCAAATATGAGATTATTGTCATCACAGGTGATGTGAAGGGAGCTGGGACTGATGCCAATGTCTTCATTACCATCTATGGTGTGAACGGCGACTCAGGGAAGCATCCACTGAAGCAGAAATTTAGGAACCTGTTTGAGAGGGGCCGTACTGACCGCTTCATGTTGGAGATGCTGGACTTGGGTGATCTCCTGAGAGTAAAAGTGGAGCATGACAACACTGGCCAAGCACCAGGCTGGTACCTGGAGTGTGTAGAGATTACAAACACTGCCAACTGGGTTACCACAATCTTCGTTTGTGGAAAGTGGATGGATAAAACAAAAGCAGATGGAGAAATCGAAAGAGTTTTGTTCCCCAGATACTGACACTCGTACCTTTTTTATGAACTggttttccattttaatttacatttttcattagtttattaatttttagaaatgaatttttaaaattttaaaactatttagtACTTTTTGAATAGCAATTTGAGCCAACATTTTATCTAAATGAAATAATGGATTCGATGTAAAAGAGCCAtcttaaagcattttttaaattttatttgaaaaacacatacaa

Function

GO: NA

KEGG:

id description
K24822 LOXHD1; lipoxygenase homology domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157873 lncRNA upstream 29735 16042840 ~ 16043039 (+) True G133635
TU157862 lncRNA upstream 53956 16011774 ~ 16018818 (+) False G133631
TU157869 lncRNA upstream 53991 16011774 ~ 16018783 (+) False G133631
TU157835 lncRNA upstream 100665 15971860 ~ 15972109 (+) True G133617
XR_004578566.1 lncRNA upstream 431816 15637918 ~ 15640958 (+) False LOC117597798
TU157977 lncRNA downstream 79578 16164686 ~ 16170597 (+) True G133721
TU157979 lncRNA downstream 86077 16171185 ~ 16171500 (+) True G133722
TU157981 lncRNA downstream 87182 16172290 ~ 16172533 (+) True G133724
TU158107 lncRNA downstream 245472 16330580 ~ 16362249 (+) True G133842
TU158165 lncRNA downstream 354158 16439266 ~ 16440523 (+) True G133890
XM_026930126.2 mRNA upstream 13111 16054920 ~ 16059663 (+) True ptger4a
XM_026927175.2 mRNA upstream 30627 16034502 ~ 16042147 (+) True mrps27
XM_026928384.2 mRNA upstream 43415 16024372 ~ 16029359 (+) False znf366
XM_026928393.2 mRNA upstream 43415 16024482 ~ 16029359 (+) True znf366
XM_026928403.2 mRNA upstream 43415 16025071 ~ 16029359 (+) False znf366
XM_026918883.2 mRNA downstream 25264 16110372 ~ 16124577 (+) True bnip3la
XM_026921706.2 mRNA downstream 43078 16128186 ~ 16158486 (+) True dpysl2a
XM_034306811.1 mRNA downstream 52454 16137562 ~ 16158486 (+) False dpysl2a
XM_026910718.2 mRNA downstream 139506 16224614 ~ 16231225 (+) True tmem230b
XM_026910773.2 mRNA downstream 146993 16232101 ~ 16270087 (+) True igsf9b
TU157866 other upstream 53991 16002061 ~ 16018783 (+) True G133631
TU157849 other upstream 61170 16002061 ~ 16011604 (+) False G133631
trnae-cuc_19 other upstream 1092870 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 1749324 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 2365224 13705256 ~ 13707550 (+) False LOC113527348
XR_004578524.1 other downstream 317640 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 495149 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 495345 16580453 ~ 16594403 (+) False mtmr3
TU158256 other downstream 495345 16580453 ~ 16594403 (+) False mtmr3
TU158261 other downstream 495345 16580453 ~ 16600585 (+) False mtmr3

Expression Profile