RNA id: XM_026921437.2


Basic Information

Item Value
RNA id XM_026921437.2
length 2361
RNA type mRNA
GC content 0.43
exon number 14
gene id cdc14b
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15907529 ~ 15920012 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTGCTGCTCGGGTTGAGCTCCTCCTGACTCTACTGCAGGGTTGAGAAAGTTTTTCTCACAACTTCAGCCTTTTCGTGATGTCGCGTGCGGTGACGCGGCGCAGCTGATGGCGCAGTGACGTCACGCCGACAGGACTCAGAAACTTGCCCTATACGCATCGGCGGTGCGCCGCAGAAAAGCCCTTCGATACAGCGACTGGAGTAGTGGAGTATTAGTGATTTAGCCTTTGTGCCGACGTTCTTCTGGAGCTCGGAGAATAACCCGAGAGAGACAAAGCCAACTCTGCACATACGGATTTGAAATGTGAGAGATGAGCGCGTGAGCAAGCGAAGCATGAAGCGTAAGCGCCAGAGACGAGCTGAGGCGAGGAAAAGGCTCTGCGCTGCAAAGAGGGAGGACGACAAGCCCAAAGCTGACATTTACCTCGGGATAACAGATCAGCTGTATTTCGCTATCCTCAATCAGAAGATCAGGAGCACCCCTGAAAGACACTGTTTCTGCATAGATGAGGAACTCTCCTATGAGAACTTTTATGCGGACTTTGGACCCCTCAACCTGGCTATGTTTTATCGCTTCTGTTGCAAACTGACCAAGAAGCTCAAGTCTGTGACACATGCCAGAAAGAAGATTGTGTTCTTTACCTGTGGGgacaaaaagaaacaagcaaATGCTGCCTATTTAATAGGATCATATGCTgTGATGCATCTCCAGAAAACACCAGAGGAAGCATACAGCCTACTAGTCTCCAGAAACGCCACTTATCTTCCTTTCCGAGATGCTTCATTTGGAACTTGCATGTACAATCTGAATATCCTTGATTGTTTACGTGCAGTGCACAAGgCGCTGCAGTTTGGCTGGCTAGATTTCTCCAACTTTGATGTGGAGGAATATGAGCATTATGAGagagctgaaaatggaGATTTCAACTGGATTATTCCAGGAAAATTTTTGGCCTTTAGTGGTCCACATCCAAAGAGCAAAATTGAGAACGGTTATCCTCTCCATGCTCCTGAGGCCTACTTCCCATATTTCAGGAAGCACAACGTCACCACTGTCATACGcctgaacaaaaaaatgtatgatgcCAAACGGTTCACAGATATGGGTTTTGACCACCACGACCTGTTCTTTGTTGATGGGAGCACACCTAACGATGCCATAGTCAAAAAGTTCATGAACATCTGCGAAAATGCGGATGGTGCCATAGCTGTTCACTGTAAAGCTGGCCTGGGTCGCACTGGAACGTTAATAGGTTGCTACCTGATGAAGCACTTTAAACTGACTGCAGCCGAGGCCATCGCCTGGATCAGAATCTGCCGGCCCGGCTCGGTGATCGGACCTCAGCAGAACTTTATTGAGGATAAGCAGTCCAATCTATGGATGGAGGGCGATCTGTATCGGCAGAAGCAATGTGAACAGGAAAATGGCATAAACAAAGCAGCAGTCACAGGAATACTGTCAGGAGTAGATGACATCTCCATCAATGGGACAAATAAGAACAGTGCACCAAGAAAAACTGAAATGTATAATGATGGAGAGGAGGAGCACAACGGCCTCACTCAGGGTGACAAACTGCGGGCACTGAAGAGCAAGCGGCAATCCAGAGCATCCACAGGTTCTTTATCGGTCATTCTGCAATCAAGTGCACAGAGttgtaaatctgtaaaatctCAGAGTCCCTCGGATAATGAGGATGTTAGAAAACGAACCAGAACCTCACTAGGCTCCAACAGAGAGAGCAGtCCTGCAGTCCCTAAAGCTAGAGCACCTCTACTGCGTTAAATGGATGGTTTTGGAAAACATGAGTGCAAGTAACTTCAGAAAacgtggattttttttttcttttattcatttttttttatatattattccTGTAAAGTATCAAAACAGTCTACTTTGATCAAAAAACAGATTGTATTGACAGGCTTGAATAATTTTATCTACAAAAGACATTTTatgtttgtacagaaatgtcAGAAACAATGGGGGATTTGTAATGCAAATGTTATgtgaaataagatttttttttttctattttaacatTAGAATCATGAGTCAAAGTCCTGGTAGAATGTAGCCTTGTCATTAGTATCCTTTCTTACTAATGTTTCTGCAAGTTGGTTACCTCTGTGCCCTGCTAAAATCTGAAGGCTATTGTGAGACTTTTTCGTTTAACAATCTTTGTTCCACAGTTGagtgctgtgtgtatatatatgaatatttgatACATCTGAAACACCTGTTGTACATTTATAcctgtaaatactgtaataactTTTGGTTTATTCATGTCCAATTATACTTCCTATTTCCTGAGTACATTTATATATCATGTACTATAAAGCTTGGTTTGTAAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578565.1 lncRNA upstream 266575 15630453 ~ 15640958 (+) True LOC117597798
XR_004578566.1 lncRNA upstream 266575 15637918 ~ 15640958 (+) False LOC117597798
TU157574 lncRNA upstream 301194 15597408 ~ 15606339 (+) True G133386
TU157510 lncRNA upstream 481161 15425189 ~ 15426372 (+) True G133342
TU157491 lncRNA upstream 505771 15401446 ~ 15401762 (+) True G133330
TU157835 lncRNA downstream 51848 15971860 ~ 15972109 (+) True G133617
TU157862 lncRNA downstream 91762 16011774 ~ 16018818 (+) False G133631
TU157869 lncRNA downstream 91762 16011774 ~ 16018783 (+) False G133631
TU157873 lncRNA downstream 122828 16042840 ~ 16043039 (+) True G133635
TU157977 lncRNA downstream 244674 16164686 ~ 16170597 (+) True G133721
XM_026941200.2 mRNA upstream 2035 15899578 ~ 15905498 (+) True prxl2c
XM_026925091.2 mRNA upstream 424837 15473676 ~ 15482696 (+) True LOC113533162
XM_026925097.2 mRNA upstream 424837 15473676 ~ 15482696 (+) False LOC113533162
XM_026929475.2 mRNA upstream 443650 15454048 ~ 15463883 (+) True LOC113535909
XM_026925285.2 mRNA upstream 454790 15443927 ~ 15452743 (+) False csgalnact1b
XM_026926150.2 mRNA downstream 3278 15923290 ~ 15927646 (+) True znf367
XM_026915243.2 mRNA downstream 76313 15996325 ~ 16003311 (+) True smyd1b
XM_026915252.2 mRNA downstream 76314 15996326 ~ 16003311 (+) False smyd1b
XM_034306613.1 mRNA downstream 85470 16005482 ~ 16010899 (+) True LOC117597822
XM_026928384.2 mRNA downstream 104360 16024372 ~ 16029359 (+) False znf366
trnae-cuc_19 other upstream 927629 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 1584083 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 2199983 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 2537914 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 2843411 13064050 ~ 13064122 (+) True trnaf-gaa_25
TU157849 other downstream 82049 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 82049 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 482736 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 660245 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 660441 16580453 ~ 16594403 (+) False mtmr3

Expression Profile