RNA id: XM_034306508.1


Basic Information

Item Value
RNA id XM_034306508.1
length 3599
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC113531612
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15357916 ~ 15364024 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACACATGTAATGCACtttagggaatagggagtagggcacCACATCGGATGAAGACTGTTAATTATTTACTCCTACCCTACTTCTGCAAGCTTATATTATATAGCGTCGTGATTTCTCTGCACCTTTGGTGTCAGATTTGAAAGCTTAAGttagttttattccttttaaacgTATTATATTACACCTAAAGTTCCACTTAGTGTGAAAGCTCTCACATCGTATACTACCACCTGGTACTCAAAATCAACTGCTCAAAGAAAGCGGGAGACAAGGATGGACAGCCTTAATGCTGGCTGCGAGACACGGACACTTTGATGTGGTAAAAGCATTACTTTTAAATGGGTGTAATAAAGATTTGGTGAATAAGTCAGGCCAAACTGCTCATGACATAGCAAAATTCTGGGGCCACAGACACATTGCCCGTTTTTTATCCAGCAGTGGGGATGTCACACTTCAAGGGGTTCTACCCAGCAATAAATCTAGAGAGAATGAAACATTCTTCAGTAGAGAATATCTCAACAGAATGAGTGATAAAAGGACTGATTTGGAATGGCTTTCAGCTAAACAGTCTTCTCCTGAAACAGtgttcattgtgttttataaCTTGGACCCTTTTGTTACAACAGAGCCGGAGGAAATGAAGCAACCTAAGTTAAAACTATACAGGTTTGGAAAGGACTCTGTGAAAGAAGTAATCGAAAAGAGTGACACAGTGGTTATTTTTCTGGGAGTAGAAAAGCAGGAATGTTCACCTTCTTCTCCGGTGTCAAAGGAGGATGGACTCATTGCATGGTTTGCTCTAAATACCAACAACAATCCCACAGAAAGTCTTAAGGTCACAACTTCAAACAGCTTCTTCCTTACAAGGCCAATGCCAAGGCTCCTAATGCTAAATGAAGATGAAGCAGGTATTGTTGTACAAGCAAGGTCTGTCCTTGCATGGCACAGCCGGTACAGTTTCTGCCCAACGTGTGGTGGTGAGACTAAAGTGGATGAAGGAGGTTACAAAAGAACCTGCTTGACAGAGGGCTGCAGGAGTCTCCAGGGAATCGACAATACCTGTTACCCTAGAGTTGATCCTGTGGTGATCATGCTGGTCCTTCACCCAGATGGGAATCAGTGCCTACTAGGAAGAAAGAAGACATTTCCTCCAGGAATATTTTCATGTCTTGCTGGGTTCATTGAACCAGGTGAGACCATTGAAAATGCAGTAAGGAGAGAGGTTTTAGAAGAGAGTGGAGTTGCTGTTGGCCCTGTCCAATATGTCTCCTGCCAGCCATGGCCAATGCCTTCATCGCTCATGATTGGTTGCTTTGCAGTAGCAGTGTCTACAgacataaaggttgatgaaaatgaaattgaagATGCTCGCTGGTTCACGAGGCAAGAGGTAATAGATGCTCTTGTGAAGGGTAACCAAGCAGTTTTTTTCATGCCTCCAAAACAAGCTATTGCCCATTATCTTGTGAAACACTGGATTGGAATAAACTCAAACCTTTAAACTGAATGTTACCAGCATTATTGGGGTGTTTTCCTAATTTGCCATGAGATGTGGTTGGGAGGTATGAGAGTTTGAGATGGACTCAAAAGTGCATCTTACATCATAAAActcttttaaattaatataattattatgaattaattGTAGTATTACTATATGAAATAGATGTAAGTGACCAGATTGTAATTCTAACAATCTTATAAATGATTACACTTGTAAGTTGTACTACCTTTCATTCCAGACTGCGAGGGTGGATTATTTCAGAGCCGGTGGTGTATTGCCATTTTCTCGTTTTCTTGCAAAGTTCCAACAGTAAATTTGTCTCCTTGTGCCCAAGACTGGGTAGCCTGTAAAAGGTCCCACTTCGTCCTGCTAGTCCTCGTTTCCAGGCTTATCTTGTCAAGAAGTTAAGCTAGCCTCTTGTCTGGCCAGCTTCATCAGGTTCTGTAGCGATATCAGAAGAtgtgtttactgcagtttcTGTAACAAGGCAGTTTTCACAGGGTGGAGTTGTTGGCCTCATGCCCAACCCCCAACCTGGAGGTCCAGGGGCTGAATCTAGTCTGGCCCCTGACCCAAGGCCTGTCTGGCACGGTTAGACCTGCCAGGGATATTCGTCCCTGCCATTGTAGCTCTCAAGTTCTCTGGGATGTGCAAACGGGTCCACCAATGACAAGGTAGCAGCCCAGGACCAGATAATTGACCAggataattgaaaaaaaaaattgagtatCAGGCTCTATTCGCTTGATTCTTGCTAATAAGTCCAATGTTCTAAAATGAGAAAGATAAGCTCCTTGGCCAAGTTTCCCCAGTAGGAACATAAAAAGGTAGAAGACATTTGCTGATCAGCCCCTTCTAAGAGGAAGAGCAAATATCTTCACTGCATTAGCTCATCAGCCTCATGTAAGAGGAAAAGCAAGTGTCTTCACTGCCAAATGCAAGAGAGCAGTGAAGTGAAAAGGAGAGTTTAGTACATCAGCCTTTCACAGAGTGCCCAGGTATACTTTCAGTGGCTGTGTCTCATTCTCTAACCTTGACGGAGAGCTCTGGTAATATCAACAACAGGAGACACTGCAGTGTATCCAACAGTCTATGCAACCAGTGTTGCTATGTTCTGGCCATTATCACAGCAGAGCATGAACAGTTATGGGTTTGGCCCCTGGAAGCATCTCCAGAATACTAAAATGTTCACAACCGGTCATGCACACCCTTGTGAGTGTACCATCTACCTGTTGTGCAggcaaatgaaacattttttcacTGTGGTGCAAAACACTACTGTGTTTTTAGTACAGTCAGCTTTTTCACTATAGCCAGAGGAAACATACCATGTTGTTGCCTAACCCACCATTCCTGCCAAAAGTGTGGAGGTTGcgatataataataaatctgccATTATTATATTAACCTTATCTCGCACATGAGAATGTGCCCAGCGTAGTCCTGTGTCCAGTGAGGGCTTTCAAGCCGTATGTGAAAGTGACAGCAAGCTGGCAGGTCACTGAACACTGTTTGGCTCTTCTGTCTAAAGAGAGCTTAACCTATTGGGTAAATAATGTGATCGCACAGGCATACTTGAACACAGGTCAAGAGGTATCTTCTTCCATTAAATGCCATTTGATGCTCCTTCCTGGGCAGCACTAATATAAGCGTAACTGAAAAGGAAATTGTGCTGGTGGTCTGGAATGAATGGAAAGAGAACAGAAagttatgtatgtaactgtggatCTACACCTTTTGAGTGGAGTACCACCTGGTCACTCTGGGTGAATGGCTGAACGATGGGGCTGATGTAGAGAGGACTTTTTATAGGCTACCATGGGGACAATATTTGGTCAACTTTGCTAATGGCATTTGGCCACAAATGCAGGAAAACGGGAATACATCACTAGTTCCAAAGGTAACCATTCTCCACTGAGTCATAGAGCCATGGTTAAATACCCTTCCAAACTCATGATAAAGAAATCTTCTTTGCTATGTTGTTTCAGTTATTTTCAcctttaaatacttttttcaaGTGGATGTAAATGTTTGTAGTGTCACTCTATACTGTGTAATAAAAATCATATGATGTGTAAAAGTAAATCATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157435 lncRNA upstream 14091 15343754 ~ 15344031 (+) True G133306
TU157377 lncRNA upstream 58735 15299184 ~ 15299387 (+) True G133260
TU157332 lncRNA upstream 148276 15209515 ~ 15209846 (+) True G133220
TU157181 lncRNA upstream 375249 14943077 ~ 14982873 (+) False commd10
TU157035 lncRNA upstream 533759 14821982 ~ 14824363 (+) True G132968
TU157467 lncRNA downstream 14938 15378962 ~ 15384824 (+) True srp19
TU157491 lncRNA downstream 37422 15401446 ~ 15401762 (+) True G133330
TU157510 lncRNA downstream 61165 15425189 ~ 15426372 (+) True G133342
TU157574 lncRNA downstream 233384 15597408 ~ 15606339 (+) True G133386
XR_004578565.1 lncRNA downstream 266429 15630453 ~ 15640958 (+) True LOC117597798
XM_034306509.1 mRNA upstream 645 15351226 ~ 15357477 (+) True LOC117595717
XM_034306361.1 mRNA upstream 81182 15246938 ~ 15276940 (+) False prdm6
XM_026928348.2 mRNA downstream 14918 15378942 ~ 15384433 (+) False srp19
XM_026922605.2 mRNA downstream 34248 15398272 ~ 15402724 (+) True lrrc2
XM_026930898.2 mRNA downstream 54440 15418464 ~ 15439687 (+) True spinb
XM_026930912.2 mRNA downstream 54440 15418464 ~ 15439687 (+) False spinb
XM_026930904.2 mRNA downstream 54440 15418464 ~ 15439687 (+) False spinb
trnae-cuc_19 other upstream 378218 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 1034672 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 1650572 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 1988503 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 2294000 13064050 ~ 13064122 (+) True trnaf-gaa_25
TU157849 other downstream 638037 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 638037 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 1038724 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 1216233 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 1216429 16580453 ~ 16594403 (+) False mtmr3

Expression Profile