RNA id: XM_034306953.1


Basic Information

Item Value
RNA id XM_034306953.1
length 1737
RNA type mRNA
GC content 0.41
exon number 10
gene id tpd52l2a
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13372492 ~ 13386385 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGTCACTGTCGTGTTCCGGAAGTGTGAATCTCAAGATAATATATCTACACGTCAACAGTGCGCTTATTAGCCGAACTCCTCCCGTGAAACTACTGAACAGTTTATAACGCTAAACgctaaatatttacacaacaaTTTCCAATGCAGATGGACTCTGGGGACAGAGGTTCCTTCACTGAGGGTGGAGCAAGTGCGAGAACTTTACCTCCAGGCTTGACGGAGCAGGAAGCCGTGGAACTGGAGCTGGAGCTTAGTAAGGTGGAGGATGAAATTCAGACGCTGAGGCATGTTCTGACAGCCAAAGAGAGGCATGCTGGGGAACTGAGGCGGAGGTTGGGAATAAGCCCTCTGACTGAGTTAAAAAGCAACCTCACCAAAGGCTGGCATGAAGTCCAGTCTTCTAATGCTTATATGAAAACCTCACAGACTCTTGGGGATTTGAATCAAAGAATTACATCATCTAACGTttatcTTACAGCATCTGCTACTCTGGAAGACATAAGTCGTTCTGACGCCTATAAGAAAACTCAGGAGACTCTGTCCCAGGCTGGTATGATGACATCATCTGCTTTCTCGTCACTGGGTTCAGCAATCAGAAGCAGACTGGGAGAAATGAGGGCTTTGACTTACATGCCCCCATCAGGTAGCAGCTACTCCATGCGCCACTCCCTAAGTATGCCCACTATGAGGTAAAGTACCAGGAATTCGCCAACATTTAAAAACTTGGAGGACAAAATGGCAGGTAAAGGAAGCACGAATGGCGAAGATGCGTAACTGCCACCTGGCAATGGTTCTGAACAGGAAGCACAGATTCATCACCAAAACTGACCTCTGTGACCCAAACTACCCCAAGTCCTTTAAAGCGCTATACTGAAAGCTAAGAGATGTCAAAACGTTTGAATAAATAATGCTGAACAGTACTAAAGTCCCAAAATGCTGTTAAAGTCTACAACTACATCTCTGCTGCTTGCTTTAAAAGGAGAAACCTTGAACcttgtgtggggaaaaaaaaaaaaaaaaaaaaccctttgcaaactgacagtgtgtgaatgcatgaCGCACACGACTTGTACTACTGTTTCACTTGTATCTAATGTATGAAAAGGTTTTCAGAATGGTGTCTGCTCTGATATTACTACTGATATAATTCACTTGTGGTTCCATGCAGCATCGTATGCACTCCGACACACTGTGGATTAAATGAAAACGCTTCCTTGGCAGTATATGTTCCTCCTGTTGCATATGATTAATGAGAATGTAACAGACTGCTTACTACATCCCTTGTAACTCAGGGCAACAGGTGCTAGCGCTGACTATAATGTGATGAATGTAACTACTGCATTATAAACTGCTTTATGGAATATGAGGTAAATGTTcctgatttaattaaaataattgatcCTTTTTGGGTTAAATGAAGGACTCTTATGCTTCTATACACTGGTATTTGGTTAAATTATCTGTTTGtccttattttgtttttttctggtgtGACTATGgtaaaaggaaatatttagGTACAATTAAACATACAATAGACAAGTGTTTGTTTGCCTGGCTGTCCTGAAGTTAATACTCAGGATGTGCTTAAGGATGAAgtaaaatatgaaatgactgtTACCTTTAGCCCGTACACAAATCTGAAAACTGGTCTGTCTGGCTTGTAACGTGTGATTTTTATggtatttaacattaacattgttATAAACATAACAAATAAATCTAGAGGTGGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155912 lncRNA upstream 4316 13365880 ~ 13368176 (+) True G131968
TU155905 lncRNA upstream 46779 13325504 ~ 13325713 (+) True G131962
TU155899 lncRNA upstream 54986 13317298 ~ 13317506 (+) True G131956
TU155897 lncRNA upstream 56829 13315443 ~ 13315663 (+) True G131954
TU155870 lncRNA upstream 97397 13274135 ~ 13275095 (+) True G131930
TU155919 lncRNA downstream 6140 13392525 ~ 13400280 (+) True G131972
TU155931 lncRNA downstream 34320 13420705 ~ 13422214 (+) True G131980
TU155938 lncRNA downstream 47532 13433917 ~ 13435294 (+) True G131987
TU155891 lncRNA downstream 49116 13435501 ~ 13436958 (+) True G131948
TU155890 lncRNA downstream 51537 13437922 ~ 13439730 (+) True G131947
XM_026925300.2 mRNA upstream 19889 13309890 ~ 13352603 (+) True nol4la
XM_026929521.2 mRNA upstream 147173 13214466 ~ 13225319 (+) True gpr173
XM_026930223.2 mRNA upstream 227285 13136689 ~ 13145207 (+) True wasb
XM_034306692.1 mRNA upstream 237863 13113706 ~ 13134629 (+) True slc38a5b
XM_026917085.2 mRNA upstream 237863 13113706 ~ 13134629 (+) False slc38a5b
XM_026912780.2 mRNA downstream 77746 13464131 ~ 13489999 (+) True si:dkey-70p6.1
XM_026912789.2 mRNA downstream 77746 13464131 ~ 13489999 (+) False si:dkey-70p6.1
XM_034306380.1 mRNA downstream 137336 13523721 ~ 13541674 (+) False emilin3a
XM_026924721.2 mRNA downstream 151026 13537411 ~ 13541674 (+) True emilin3a
XM_026913672.2 mRNA downstream 230219 13616604 ~ 13685739 (+) False magixa
trnae-cuc_18 other upstream 2873 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 308370 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 310484 13061936 ~ 13062008 (+) True trnav-cac_9
trnad-guc_1 other upstream 990422 12381999 ~ 12382070 (+) True trnad-guc_1
TU154763 other upstream 1661947 11709454 ~ 11710545 (+) False porcn
TU156117 other downstream 318871 13705256 ~ 13707550 (+) False LOC113527348
TU156645 other downstream 935787 14322172 ~ 14323450 (+) True G132595
trnae-cuc_19 other downstream 1593448 14979833 ~ 14979904 (+) True trnae-cuc_19
TU157849 other downstream 2615676 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 2615676 16002061 ~ 16018783 (+) True G133631

Expression Profile