RNA id: XR_004578566.1


Basic Information

Item Value
RNA id XR_004578566.1
length 1691
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id LOC117597798
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15630453 ~ 15640958 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGAGAACCAACACCACAGATGACACCTCATCTTTGCAGACATCTCAACTTGCCTCAGAGACATCACATTCTGGATGAAGGTTCACTCTCACTCCAGCTCAACCTATCATCATAGCCTGTCATTACAATTGTCATTACAGCAAGTCCTTAAATTTTAGCCCTCCTCCACTGTCCAGCTCAGCTCATtgtcattattatcatcaagGTCCACCAGGAGCCTTGGGGTAATGATTGATGACCAGCTAAGCTCTCAAACTCTCAAGATTTGCTCTGTatgaaaacaggaagctcaGGTCTCTTCCAGATACTCGCCATCTCACAACTCTATACTGCTCACCAAATCCGcttgcagtaatgatccaaatGTGGAAGTTATAGGTCCTCGTCTACTGACTGGCCAGTGGAAGTTCATCTTCTTACAAGGAATCATTTATGGCATTCATGGCATTGCATACTGATCACTAAGATGTGTTTGGTAGCAAACAGTGATTGGTGATAGCACCACTGTATGGTGCTGGTCCTCTTTTCACATGTGCTTTCCTTACACTTTTCAAGAATTCTTGGAAGACAAGAAGTCACTTAAGATTGATGCAGAAactcatcaataataataataataataataataataataatatgtttaatttatatagtgcATTTCTCACACccaaggtcactttacaattacaaaaaacaaacacagaaaaacacagagtcCTCCAAAAGCTTCTGGGATCTAATTTCAGTGGAATATCTGCTCATAATCTCACACAGCCTGTACAGCCACAATGCCACCGGGCAACACTGCTCAGAACGCCACACCATGGAGCCACAAAGTGAGCACAGACACATTGCTGCACAGAGTGTTGAGCAGTCCCAAGACCACTCAGAATAATCATACTCTCCACCATCGACAAGAGCAACAGGCACACCGTAGTCCATAGCAAGCAGGAGGACGCACATCACTCATCAGTGCTTTCACTTTAATTCATATACGTACATCTCAGATGTGCTATGTTTGTGGTGATTAGTAAACTGTGCTCCTAATAATtatgtactattattattttgtattattatatattactctAATTTAGCCTTCTTGAAGACTGCATAATTTGTACTTTAACTAAGTGCTCTGTTACTAGCAGTCCTGAGTATTAGCACTAAAATTCTAACCTACTGTATGTGTGATGCACAGAGGGAAACTCTGATACGAGATGTGTAGAGGACAACAAGGTCAGAATGACAAACAATTAAAGTGATGCTCTGACTTtttaatattatcattatttatatcaGTAAAAGTTTTACACCAGATGTCCTAATGAGTTGACCCCCACTGTGTAACAGCCCATGACACAAAGTATGCGGGAATTTAAGACCTATcctataattattaatacaggATTACCTTAAAAGTTTACTCATTAATTTTACTCAAAAGTTTATACAATAATTTCATATCTACCATGTTCTCTGGCTCTCTGTTTTCCTACAACTAGctaactgtatttgtttttggtaAACCGATGTGTAGTCTTGAAGGATTTCTGTCATTGTCTGCTTCTGCTCCATGCTTGGATTGTATTTTGACTCATTTGTAAGTTACCATGGCTATAATTGTCtaccaagtaaaaaaaaaaaaagtaaatgtaaactCAGATTACATATAAAGCTCTAATTGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157574 lncRNA upstream 31579 15597408 ~ 15606339 (+) True G133386
TU157510 lncRNA upstream 211546 15425189 ~ 15426372 (+) True G133342
TU157491 lncRNA upstream 236156 15401446 ~ 15401762 (+) True G133330
TU157467 lncRNA upstream 253094 15378962 ~ 15384824 (+) True srp19
TU157456 lncRNA upstream 273947 15354461 ~ 15363971 (+) True G133307
TU157835 lncRNA downstream 330902 15971860 ~ 15972109 (+) True G133617
TU157862 lncRNA downstream 370816 16011774 ~ 16018818 (+) False G133631
TU157869 lncRNA downstream 370816 16011774 ~ 16018783 (+) False G133631
TU157873 lncRNA downstream 401882 16042840 ~ 16043039 (+) True G133635
TU157977 lncRNA downstream 523728 16164686 ~ 16170597 (+) True G133721
XM_026925091.2 mRNA upstream 155222 15473676 ~ 15482696 (+) True LOC113533162
XM_026925097.2 mRNA upstream 155222 15473676 ~ 15482696 (+) False LOC113533162
XM_026929475.2 mRNA upstream 174035 15454048 ~ 15463883 (+) True LOC113535909
XM_034306822.1 mRNA upstream 185175 15442500 ~ 15452743 (+) True csgalnact1b
XM_026941200.2 mRNA downstream 258620 15899578 ~ 15905498 (+) True prxl2c
XM_034306763.1 mRNA downstream 266571 15907529 ~ 15920012 (+) True cdc14b
XM_026921411.2 mRNA downstream 266572 15907530 ~ 15920012 (+) False cdc14b
XM_034306765.1 mRNA downstream 266572 15907530 ~ 15917703 (+) False cdc14b
XM_026921429.2 mRNA downstream 266573 15907531 ~ 15920012 (+) False cdc14b
trnae-cuc_19 other upstream 658014 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 1314468 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 1930368 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 2268299 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 2573796 13064050 ~ 13064122 (+) True trnaf-gaa_25
TU157849 other downstream 361103 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 361103 16002061 ~ 16018783 (+) True G133631
XR_004578524.1 other downstream 761790 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 939299 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 939495 16580453 ~ 16594403 (+) False mtmr3

Expression Profile