RNA id: XM_026945524.2


Basic Information

Item Value
RNA id XM_026945524.2
length 2549
RNA type mRNA
GC content 0.54
exon number 21
gene id tlk1b
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3348308 ~ 3371154 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

accgcgcatgcgcagtgccTCATGGAGCAGGGACGCAGCTCGGGCTGTGACAGTGGGGTTTATTTGAGAGTGCATGAACCTGTGGCTATAACGGATGTGTGCAGCGTGAAAGCGATGCGTTATAACCGAGACATAGCCGCTTCATAGCGCACTGCGGAAGGGAGAGACGAGGGAAAGAGATGTGAGCCGTCGTCATTCGGAATAGCGACGCAGGAGATGTCGGAGGTTGGATTTGTTTGGgattgactgtttttttttgttttatctccACTTCTGGGCTTAATGAGTGTCCAAAGTGAGAGGAGCCTCTCTGGAAGTTTGGACGCAGCGCCATCTTTGGTCCCAGTTCTCCATCTGCGACCTGGGGCCtggctttaaacacaaacatctcCACCACCGGGATCCGTCACACAGggatgGAGGAGCTGCAGTCTCTGGACCCTCGCAGACAGGAGCTGCTCGAGGCTCGGTTCATGGGGGCAGTAAGTGGCAGCACCGGGGGCAGCACAGGCAGCGCCAGCGGAGGAGCCAAGggctTGATCAATAATGAATGCTCCAACCACAGCTTTGGCAGTCTGGGATCATCGAGTGACAAGGAGTCTGAGacgCCTGAGAAGAAACACTCTGAAACGACtaggaggaagagaaaagctgacaaccaatcagagagcaACCAAGGGAAGTCTTCCGGCCGAGGAGCAAAGATCAGCGATTACTTCGATTTTCAGGCAGGAAACGGCTCCAGCCCTGTCAGAGGAATGCCGCCTGGTCTCCGCGCCCCTCACGGCTCTCATTCTGCCCCCGGTTCCATCGTGCGACAGAACAGTTCCTCGCCCACCAGCTTGTGTTTCACTGATCACATGATGCAGCCAAAGCAGCTCGGATTCAGGAGtgtgcagacTGATCTGACTCTGCTGAAGCTCGCTGCCCTTGAGAGCAATAAGAATCTAGATCTGGAGAAAAAGGAGGGCAGAATAGATGATCTGCTGAGGGCTAACTGTGACCTGCGGAGACAGATCGAGGAACAGCAGAAGCTGCTGGAACGGTATAAAGAGCGTCTGAACAAGTGCACCACCATGAGCAAAAAACTGCTCATCGAGAAGAGCACCCAGGAGAAGCAGTCGTGTCGGGAGAAGAGCATGCAGGATCGTCTACGGCTCGGTCACTTCACCACGGTGCGACACGGAGCGTCCTACACGGAGCAGTGGACCGACGGATACGCCTTCCAGAACCTGGTCAAgcagcaggaGTGGGTGAACCAGCAGAGGGAAGATATCGAAAGGCAGCGAAAGCTTCTCGCAAAGCGCAAACCTCCGAACACAGCACCGTCTCAGAGCCCGGCGCCTTACAACGAGTCCAAACCCAGAAAGACCAAAGCCGTGAACGGAGCGGACAACGACCCCTTCGTCAAACCCAGCCTACCTATACTGTTGACTTTAGCAGAGTATCACGAACAGGAGGAAATCTTCAAACTCCGACTGGGCCATCTAAAAAagGAGGAAGCGGAGATTCAGGCCGAGCTGGAGCGTTTGGAACGAGTCAGGAATCTGCACATCCGTGAACTGAAGAGGATCAGTAACGAGGACAGCTCCCAGTTTAAAGATCACCCTACCCTCAACGACCGCTACCTGCTCCTGCACCTGCTGGGCCGAGGAGGATTCAGCGAGGTTTATAAGGCCTTTGACCTGTTTGAGCAACGTTACGCAGCAGTGAAGATCCACCAGCTCAACAAGAActggagagaggagaagaaggagaactACCACAAACACGCATGCAGAGAATACCGCATCCACAAGCAGCTGGACCATCCCAGAATAGTCAAACTGTACGACTACTTCTCCCTGGACACGGACACGTTCTGCACGGTGTTGGAGTTCTGCGAGGGGAACGACCTGGACTTCTACCTGAAGCAGCACAAGCTGATGTCTGAGAAAGAAGCCCGTTCCATCGTCATGCAGATCGCCAACGCCCTCCGATACCTCAACGAGATCAAACCGCCGATCATTCACTACGACCTCAAACCAGGTAACATCCTGCTGGTGGACGGTACTGCATGTGGAGAGATAAAGATCACCGACTTCGGTCTGTCGAAGATCATGGACGACGATAACTACGGTGTGGACGGTATGGACCTGACCTCACAGGGAGCAGGGACCTACTGGTATTTACCACCAGAGTGCTTTGTAGTCGGAAAAGAGCCGCCAAAGATCTCGAATAAAGTGGACGTCTGGTCTGTGGGCGTCATCTTCTTCCAGTGTCTCTACGGACGCAAGcCGTTTGGACATAACCAGTCTCAGCAGGACATCCTCCAGGAGAACACCATCCTCAAAGCCACTGAAGTCCAGTTCCCTCCCAAACCTGTGGTCAGCAACGAAGCCAAgGCGTTTATTCGGCGCTGTCTGGCTTACAGGAAGGAGGACCGTTACGACGTCCACCAGCTCTGTAGCGACTCGTACCTGCTCCCTCACATCCGGCGAACCAACTCGTCCGGAAACCTGCAGGCCACGCCCACTAGCCCCGCCTCCTCCTCGATCATCTCATACTGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25039 lncRNA downstream 286 3350268 ~ 3353187 (-) False tlk1b
TU25040 lncRNA downstream 286 3350268 ~ 3353187 (-) False tlk1b
TU25041 lncRNA downstream 286 3350268 ~ 3353187 (-) False tlk1b
TU25065 lncRNA downstream 7338 3344474 ~ 3346135 (-) True G21031
TU25015 lncRNA downstream 142542 3210509 ~ 3210931 (-) True G20991
XR_004580296.1 lncRNA upstream 178478 3549631 ~ 3551951 (-) False LOC117599952
XR_004580294.1 lncRNA upstream 178478 3549631 ~ 3551951 (-) True LOC117599952
TU25222 lncRNA upstream 285242 3656395 ~ 3656672 (-) True G21153
TU25404 lncRNA upstream 342146 3713299 ~ 3715043 (-) True G21303
TU25413 lncRNA upstream 413987 3785140 ~ 3785554 (-) True G21306
XM_026945442.2 mRNA downstream 301196 3044007 ~ 3052277 (-) False tatdn2
XM_026945444.2 mRNA downstream 301350 3044007 ~ 3052123 (-) False tatdn2
XM_026945445.2 mRNA downstream 301350 3044007 ~ 3052123 (-) False tatdn2
XM_026945441.2 mRNA downstream 301350 3044007 ~ 3052123 (-) True tatdn2
XM_026945443.2 mRNA downstream 303668 3044007 ~ 3049805 (-) False tatdn2
XM_034314878.1 mRNA upstream 22823 3393976 ~ 3415402 (-) True slc25a12
XM_026945432.2 mRNA upstream 56169 3427322 ~ 3435211 (-) True unc50
XM_026945439.2 mRNA upstream 159631 3530784 ~ 3538021 (-) False LOC113545819
XM_026945438.2 mRNA upstream 159631 3530784 ~ 3538021 (-) True LOC113545819
XM_026945526.2 mRNA upstream 333721 3704874 ~ 3711757 (-) True ctsz
trnaf-gaa_13 other downstream 316117 3037284 ~ 3037356 (-) True trnaf-gaa_13
TU24006 other downstream 1530911 1812759 ~ 1822562 (-) False slc9a7
TU23548 other downstream 2315899 1028859 ~ 1037574 (-) False slc48a1b
trnaq-uug_1 other downstream 2391866 961536 ~ 961607 (-) True trnaq-uug_1
XR_004577153.1 other downstream 2700455 652731 ~ 653018 (-) True LOC117595970
XR_004580246.1 other upstream 346562 3717715 ~ 3736886 (-) False npepl1
XR_004579840.1 other upstream 378865 3750018 ~ 3777988 (-) True rab22a
TU25557 other upstream 885515 4256668 ~ 4257087 (-) True G21434
trnaf-gaa_14 other upstream 960946 4332099 ~ 4332171 (-) True trnaf-gaa_14
XR_004577457.1 other upstream 1076214 4447367 ~ 4447479 (-) True LOC117596284

Expression Profile