RNA id: TU27688


Basic Information

Item Value
RNA id TU27688
length 5019
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G23330
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 7705127 ~ 7710210 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAAAAAGTCCAGGGAGTCAAATGACAGTGAGTTTGGGTTTATACACTGTGCAGTCACAGATTATATGGTTCACCGCTGACAAACCATAAACAAATAATGCTTAGCTTTCAACCCACTAACCTAAATGTGGCCAGTGAGTTCACTGTTTAAATGTAACAGAAGGGCAGAGAAAGGGGGCTTTAAGGAGGAGAGACATGGGAAAAGAAGcactaaagataaaaaaaaaaaaataaatcacttgcGTCTACTAAGCAGAACGGAAACACTTGGCGTCTGCTGCACTCAACATATGAGCAGCAATCTGAATGGAATTAAaactctttctctgtgtgtgtgtgtgtgtgtttgcttgtgcACTTTCATGAGCCGGTTGCTCAACACCCGGCCACCCAGTTTACATAAACACTCTGCCCTTCCAGCAGTACAACAACCACTCGGCTTTGTCTCGAGCTCTGAATTCTGAGTATGCGAGTGTGTTTATACGTTCTGTGGTCACCATTTTAAACACACCTACCTTCTAGCTACAAAGATCGACCATTTCGTCAGGTAAAACTACCATATAGGTGCACGTTATCCCTACTGTAGGTATCTCCATCTGTGGCTATGTACGATTTGTCTTACCCAATCCATCAGTAGAAAGGGAGCACTGCTGACCTGATGTTTGGCTGGTGGATCTCAGCACAGTAGTGACACTGATACTGGgctaatggagtgtgtgtgtgtgtgtgtttgggggtatGGGGGTGTGTTTTGCTGACATTATGACACCTGAATTTCACTTCTGGGTTGAGAAATAGTTGACGaaccaaaaatatccagccaacAGTGGTGCTGTTGTCAGAAATGTACACTGATGATGAGGCTATACAACGATAAGCAAATTGTGCAggggagcaaaaaaaaaaaaaaaagaaagaaagtgaaacacttttaacacacactttttaatacacactctgtatatatatatacatatacatgggtacagggtgtcccaaagaTCTCCATATATGGGGGAAAATTAGCACTTTTCGGCCAAAAAAGTCaattccaaaatttttcatacattgtttatattgcatattttttcagatttcagaacatactgaaatcattctcatggttGGATCagctgttgcaaggttgcgatggacctcaacaggaaacatggcaagcacatcacacactcacactgttgccaaacttgttaacaaattcaaaaagactggaagtgttgtgggCCAACTGAGAAgcggacgtccacgaacatccgcTGACGAAGGCACAGCTGACGTGGTGCTGACATGCATAGtccatatgtatgtatatgtatgtataagtgTTAGTATAAAAACAGAACATGTATCTGCTAGTTCACTTAcaaccttaattttttttcccttaaaaacTGTATGTATTAGCTTCTGCCTGAAAAGGGTGACAGTGagcttttttatatatatatatatatatatatatatatattgaatctACTTGTCCACTGGGCTACGAATAAAAACCtaatagcccagacatgaaATATGCCTGGCCCGGGCACCTGGGCTTGCCGTATGTCCATGCCAGAGGACATAACCATGGACAAGCACTCATGCTGTATGTCATACACTCATGCCAGTGGCACATAAAAACTATCATGTTAGTGTCACTGCTATACTGCAAATGATGATCCAGATCATAGCTGGTCAGTGTTGTTCTTTGAACAGGGTAGACCAGGGCATATAGCATTTACACTGTAGGTGTACCAACCAAAGTGACGactgagtgtgtctgtgtgcctgcACACACTCAACAAAGCACAGTCAGCTTAGTTGGCATGTGGCACCAGAAGATTGTCCAGGCCTTTGCTAGCTGTTGTTGAGGTTTCATAATGTTTGTCGCAGCACTGCTGGcacaatggtgtgtgtgtggcatgtggCTAAGCTCATGCTGGGATTCGCTCGTGGCTGCAGCAGACAGAGGCTGGTGACCCAAAGTAAACAAGCTTCTTATCCACTTGCACAAAGGGGCCTTCTGCCACAAATGACAGCCTCTAAGAAACCTTCCACCCCCAAAgccctgtgtgcatgtttgtgtaaatgtgtgtgtgtgtgtgttggcaatGGAGGTCTCTTGATTTGGCTTTTCCAAACCCATCTTTTACGAACGTGCATTCCGAACCACAAGTTCGGGCAAAAATTGTCTTCAGATGCTACACGTTTGGATTAAGCCCAGCTAAATGACGCCAGCATACGATAGAGTAATGTTTGCTAATGTACTGCTGTTTCCTTTAGTTAGACCAACTCTTTGAGTTCTCATACATTGTCAGTTACATCATGCTCCTTCCAGACAGTTTAATGTGCTCTGAAACCAGTATACTCTGGCAAAATCTCTAGAGCACATACCTTACTTCCAAAATCAATGTCATTTAAGACACTGTGTCTGATGCAGTCTACGATTCAACTTGGCTTTGGACTTGAGGTTATTATTTAACACCATATAACAGTCCTCTGCAGCAGCGAAGCCTCTGATGTTAACCATTTCACACAGTCGTGGCAGTTAATGATACACGACACTTGTGAAACAGGCCGCAGGTTAAAATGGCATGCTTCTCACTCAACTTCCACATCCTTAAAAGCAACCACTCTAGCAGCAGAATGAAAGGTTACTACTATAATTGACAGTTTTCTATAAGAAAATGCTCGAGGGAAAAAAGTAATCTATAATCACCAGTAGACAATTGACAGTGAACATGCCTACACTACTGTTCTCTGTGTAAAGATTTACTTTGGGTAAACATAGGCTTGAAAATGTGTAAGCAAACATTACAGGAAAAGGGGCAAACATACTTGTATATATGTACTTGCCATTGAGTTCATTCATTTAAGAATCCATCAAATGTAAAAGTCCACAGACTAATGTTAGTCAAGGACCCAAGAGAGCTTGTCAGTGCTGGTCAGGGGTCAGTGGCTAGAATGCAAAGAGCGAAGAGATGAAGCAAAATGGCTCAAATGGTCATGGCTTAAAGGAACATTTCCCCCAAATGTGCCAAACTGATTAAAGGCTAATGAGATTAGTTACACTAGCTGTTTAGAAAAAAAGGCACCTGTTGTTTTACTCGTTATTAGCAATGTGAGAATTTCATTTAGACCCAAGTTAAGGTCCGTGTTTATAACATCATTATGTTCACAGTTTGAACTTTTCTTTGGAGTGAAAAAGGGCTGAGGCCATACATGTTCTATGAActatacactaaacacactaaagtGGAAAGATGCAAGATTTTTTGCTCTCTCTGGTAGTAACACCCTACTGGTTTTTATCTGCTGTTACTGTTGTCTGGTCAAGTCTGCAAAAGCATTAGCCACTCGCCAACAAACGTTAGCATGATAGCTAAAACAAagatcagttaaaaaaaaaaaaataaataaataaataattaatgcatACCACTTTACCAAAAAGAAATACACCAAAAAATGTCAGCCATTAGATGGCCTATATTATTACGCTAGCTAAAACAGttcaggaaaaacacacacagatctgtcAAAATTACAAACACCAAGAGCGAACAGAAATATCGACTGACTAGTTGCTCTTGCCCAATTTGTTTGCAAAGCaaaaatacacataacacaTCAAGCGTGCCCGCTAGCCCCAGCCAGCTAGTTAAAACAACTGGCTAATGGCATAAATGTCCCCAAAAGGAGAATAAATCAGCTGATGGTCATTCATCAACTTCCAACCAAATTACAGAGCAAATAAATGCCTTAATGGCTTGAATCCAATCTACACTTATAACATCAGACTtctgtttggtttattttcactCTCAAATGTGCCCTCTTTTGTCTGACTGCCTGCAGCTCCTGTGTTTTTTCCTTACTTTTGTGGAGGTTGCCCATAATACCGCAGTTAACTGTACCTATTAACGCATCATAATTCCACTAAACCTGACTACAccccctctgtctgtctgcacctaattaacaaattaacagaTCAGGTTTACTCCTGGACTGCAGCCTCCCTCAACTCCAGGCTGGAGAGGCTCAGTTGAACGTGAGGTGCACTGGTACAGATTAACGCTAATCTCTTGGCTAATGAAAACAGGGGTGTGTGCAATGGAGCCTGTAGGGCCTTTGAAGACGGCTCAGCTGGGTGGAATAAAAAGAAATCCCCCAGAGCACCAGGTCCCCAGGGGCAGAGCTACAGCCTGAGTATCAGAGGTCAAGTCGGGCTTTAGCAGGTCCTTACGCCTaattctgctgtctctctcactcttgaAATTGAATAAAAGTCGTAGTTGTCTCCTGGCATAGTTACAGCAACTGGGGTCCAGTGAGGTAGGTCTTCTTTACCTAATGGAAGCCTCTTGGGCAAGATCCAGCTCATTTCacagagaatgtgtgtttattaagggcaaaaaaaagagagagagataaagacactGAATGAAAGACAGTATGTCAGCGGAGTAGCTTGTATATATACATGACCACAGGCAGCCGGGAGACGGAGGCTCTACTTCTCAGACTTGGCACAGGCTAAAGGTCGTAACATCAAAGAAGCAGCGAAAGCCTCAGAGGCTCATTGAGTCCACTTCAACAAAGCAGCCCGAGTCCATAACCAGAGCCCACTTGATTAGAAATGTAAATGCAGTACTGCCCAGCCAAGCTAAATGGCCTCAAGCACCCTACCAGGGCTGCTGAACTGAAGAGACTCATAGTGTGCTCAGCAATTTCAGCTCTCTGCTGCTTGTCTTGGCAACCGTGAGGAAAGACTCTGACCAATTCGTCCAACACTGAGCTAACAACAGGCCATTGAGTATGCTGCTGACATGGCCTGTCTTTTTTAAGGCTACACTTCAGCCTCCAAAACCAAGCTGTCTCTCTGGTTTTTGGACATCGATACTCCTAATGCATGttaggtttattattatttgaaagAACAAATTCAAGGCAAAAATCACCACCACTGTGGTAAATTTAACCCATTTTCTTCTACACCAAATCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27695 lncRNA downstream 29793 7672700 ~ 7675334 (-) True G23337
TU27226 lncRNA downstream 904308 6799518 ~ 6800819 (-) True G22896
TU27070 lncRNA downstream 939435 6718275 ~ 6765692 (-) True G22743
TU27026 lncRNA downstream 1021397 6683454 ~ 6683730 (-) True G22699
TU27022 lncRNA downstream 1029440 6675480 ~ 6675687 (-) True G22695
TU27777 lncRNA upstream 173318 7883528 ~ 7883813 (-) True G23417
TU27786 lncRNA upstream 196115 7906325 ~ 7907008 (-) True G23426
TU27787 lncRNA upstream 203486 7913696 ~ 7914794 (-) True G23427
TU27788 lncRNA upstream 205399 7915609 ~ 7916592 (-) True G23428
TU27784 lncRNA upstream 214955 7925165 ~ 7925431 (-) True G23424
XM_026914958.2 mRNA downstream 334608 7282007 ~ 7370519 (-) False chl1b
XM_026914939.2 mRNA downstream 334608 7282007 ~ 7370519 (-) True chl1b
XM_026914966.2 mRNA downstream 334609 7282007 ~ 7370518 (-) False chl1b
XM_026914975.2 mRNA downstream 334610 7282007 ~ 7370517 (-) False chl1b
XM_026914949.2 mRNA downstream 365470 7282007 ~ 7339657 (-) False chl1b
XM_026925761.2 mRNA upstream 67980 7778190 ~ 7786449 (-) True ppp4r2b
XM_034298664.1 mRNA upstream 67980 7778190 ~ 7786215 (-) False ppp4r2b
XM_026929753.2 mRNA upstream 78353 7788563 ~ 7822058 (-) True gxylt2
XM_026923857.2 mRNA upstream 281004 7991214 ~ 7993623 (-) True gpr27
XM_026921551.2 mRNA upstream 550275 8260485 ~ 8265229 (-) False mitfa
TU26888 other downstream 1225116 6479402 ~ 6480011 (-) True G22591
XR_004577391.1 other downstream 1628250 6074035 ~ 6076877 (-) False LOC117596222
TU26421 other downstream 2169067 5534124 ~ 5536060 (-) False romo1
TU26420 other downstream 2169120 5534124 ~ 5536007 (-) False romo1
XR_003403148.2 other downstream 2503915 5111463 ~ 5201212 (-) False LOC113530384
XR_004580309.1 other upstream 552409 8262619 ~ 8265229 (-) False mitfa
TU28034 other upstream 770841 8481051 ~ 8484029 (-) False tcta
TU28035 other upstream 770841 8481051 ~ 8484181 (-) False tcta
TU28036 other upstream 770841 8481051 ~ 8484114 (-) False tcta
TU28673 other upstream 1725353 9435563 ~ 9441810 (-) False tusc2a

Expression Profile