RNA id: TU27782


Basic Information

Item Value
RNA id TU27782
length 1610
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G23422
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 7927107 ~ 7928716 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTCCTTCAGCAACATCATGTGGTTCTACACAATTAGTAAAAGACATCCGAGTCCCAAGTTACAGTCTACATCTTCATTTttgtcttactttttttttatccttcacCAAACAGATTtttgaagctgtaactgtaattcAAGTATGCTGGAACGCACTCTCTAGGAAAATTACAACGTGGGTCAGTATGGCATAACTGAAAACCAGGCTAGTTTGAATAGTTCGTCGACTGAAACGTTTAGTGTTTGTACTACATGCCATAAATAACCAATAAGTTACAAATAACTCTGCCAAACAATgccattaattaatataaacagcaacaacaaagcAAGAGAGCATATCCAGTTAACTCTTTGATATAAGAATAAACTGTAAGCTCTCTTAGGATCTTTAATCCAAATATTATACCCAGATGCCTCTCCATACGGTTGATCCAGAGTCAACAACTGCAAGTGTGAAATATGAGATTCTATTCAAAAGATGTTAAAGACAGGCATCACAGGGACCGGGGTATAGTCTGGACTGTGGAAAAGCTAGAAAACTGGCAGACTTGTCTGGCAAAATGAGGGCTGAAAATGCCACCATGAAGAGCAGACAGCCTTCCCCTAGCACTcaccggaaaaaaaaaataaaatacaatagcTGAGGTGGAGTGGCAGAAAAATGAGTGAAATAGGCTTTAAGCTTAAGGACCTTGATGTGTAAAAGACAGTccaagcaggaaaaaaaaaaaaaaaaaaaaaaaaaaaggattcacAGTGTAGCTAGCACCAATGTGGGAGAGTTTCTCAGGGGGCTCCAGGAAAACAATTCAAACTCATTAAAAACtcattaaaagtgtaaaatggaACCATCAGCCAGTTTACTTAGCGAAGCTTCAATGGGAAAAAATCTCTAAAAGTATTAAGATACAACAGATAATAAATAAGTGTCATAGCCATTCAGGAAATTGTTAAAGTGTAGGTGGTTATTGTGCACAgcagaccttttttttaatacaaaaaaaaaaaaaaaaaaaaaaaaaaagttgattcaGCCAGGTTCACTTACAAGTATAAAACAATACATACAAGAGCGAGGATGCCATCTCACTGGCCCTGCTGTCACTCCAGTGCTACCAAGGTGTGATGCTGAGAATCCACTGCTAAGGGTCCAGAGAGATGAGATTATCTCTAATCAGGAAATGCATGTGTACGCATCAACATGTACGCACGTCGACATTTGGGTAAATGCGGGGATGTGACGAACATTCGTCCCTCTTTTGGTAATAGAAAGCAGATGGGCGGAATGAGAGCAGGGCAGAGGAGAACTGCGGAACAGCCAGCATCTCCACAGTGTCCAGGAGCAGTTTGAAGGCTCAGAATGACTCGTCATGGCCAAGCGAGATTTCTCGTTTTGGAGTGGAGGCACGTGACGAGCTCTTGTCCATGCTCTCGGAGCCCGAGCTCGGGTGCTGCTGCTCAGAGGCGGCACTGGACGTCACTGTCGAGGAGGATGTGGAGGATGAACGCGTCTTCTCTTTAAAGTCTGTTATGATTACTGTCACGTTCCCCACCGTGATGGCCAGCTGCTGGGCCGTGCTCCGGTCCACGTTCTTCAATTTGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27784 lncRNA downstream 1676 7925165 ~ 7925431 (-) True G23424
TU27788 lncRNA downstream 10515 7915609 ~ 7916592 (-) True G23428
TU27787 lncRNA downstream 12313 7913696 ~ 7914794 (-) True G23427
TU27786 lncRNA downstream 20099 7906325 ~ 7907008 (-) True G23426
TU27777 lncRNA downstream 43294 7883528 ~ 7883813 (-) True G23417
TU27867 lncRNA upstream 159051 8087767 ~ 8089618 (-) True G23499
TU27989 lncRNA upstream 414909 8343625 ~ 8351694 (-) False arl6ip5a
TU27998 lncRNA upstream 435584 8364300 ~ 8365123 (-) True G23605
TU28003 lncRNA upstream 488658 8417374 ~ 8417993 (-) True G23610
TU28008 lncRNA upstream 498405 8427121 ~ 8427325 (-) True G23615
XM_026929753.2 mRNA downstream 105049 7788563 ~ 7822058 (-) True gxylt2
XM_026925761.2 mRNA downstream 140658 7778190 ~ 7786449 (-) True ppp4r2b
XM_034298664.1 mRNA downstream 140892 7778190 ~ 7786215 (-) False ppp4r2b
XM_026914975.2 mRNA downstream 556590 7282007 ~ 7370517 (-) False chl1b
XM_026923857.2 mRNA upstream 62498 7991214 ~ 7993623 (-) True gpr27
XM_026921551.2 mRNA upstream 331769 8260485 ~ 8265229 (-) False mitfa
XM_026921537.2 mRNA upstream 331769 8260485 ~ 8265229 (-) True mitfa
XM_026920277.2 mRNA upstream 414908 8343624 ~ 8351633 (-) True arl6ip5a
XM_026921828.2 mRNA upstream 552333 8481049 ~ 8484147 (-) False tcta
TU26888 other downstream 1447096 6479402 ~ 6480011 (-) True G22591
XR_004577391.1 other downstream 1850230 6074035 ~ 6076877 (-) False LOC117596222
TU26421 other downstream 2391047 5534124 ~ 5536060 (-) False romo1
TU26420 other downstream 2391100 5534124 ~ 5536007 (-) False romo1
XR_003403148.2 other downstream 2725895 5111463 ~ 5201212 (-) False LOC113530384
XR_004580309.1 other upstream 333903 8262619 ~ 8265229 (-) False mitfa
TU28034 other upstream 552335 8481051 ~ 8484029 (-) False tcta
TU28035 other upstream 552335 8481051 ~ 8484181 (-) False tcta
TU28036 other upstream 552335 8481051 ~ 8484114 (-) False tcta
TU28673 other upstream 1506847 9435563 ~ 9441810 (-) False tusc2a

Expression Profile