RNA id: TU28035


Basic Information

Item Value
RNA id TU28035
length 1511
RNA type TUCP
GC content 0.41
exon number 3
gene id tcta
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 8479374 ~ 8484181 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATCAGAATGACGTCACACTCAGAACACCAGTGAACTAGCTCTGCTAAAATGGCGGATCCTACATCCCAATCCCAAGGCCTCTAGGAAACACCGTCTAACCCTTAACAACAGACAGGAGGCGCCACAGCCTGAGAATATCTCTATCTTTGCTCGCCGAAGAAGAATAAGACTTCAGTTTTGTTTACGTTGGTTGTCTAACAAATTTTCTAAACGGCAAAATGGCTTTAAGGCCTTGTTTTAATGCCCTGTTTTCTAATACTCGTTTGTTTTTGTAACACTCGCCCTTCACCTGGCTATGTGAACTAGCGAACAGGGTTTAGTTAACTAGCATTAGCTCTCCGGACTAACATGGAGGAACCGTGGGATTTCGAGTTTCTTTCTCGCATCGTTGACAGCTTAGTGTCTTTTCTGGCTGAATTTGTGGACGACTGGCTGGCCAACGACATGAGAGTCGCCGTGTTCAAAATACTTTTCAGCTGGCTTGTCCTCAGTTTAATCGCCATACATTTCGCTTGGAAAGTTTATGGTAACACGGTGAACGACATGTACTACAGGCAAGGAACTGGGGGACAGAATGGTGGCACACCAGATACAGCACCTCACCTGAGTGGATGgGAGAATGCTGCCAGAGAAATCCTAAAGTCACACCATGAGTGATCAGACACCAGCCTGGTTCATATTTTGGCTTGAGATGGGACCACGGTGACTAATAAGACCTAAGACGTCTCGTAACCAcattgttgaagaaaaaaacattccgGAGATGCTCATATGAAGGTCTTGAGAGGTCATTGTAATATCTGACACAAGAttatccaaaaaaacaaacaaacaaacaaacaaggaaCTGGTACTGTGGTTTGGTGATCGAAGAACCGTGACTGGCTTTTGAGACAGCTAGCAGCTCTTTGTTGGAAAGACTCGttgtaataattaatttatatgaaTCTTGATATGGATTGAGCTTCACGTCCATCCTTTCAGTTGCAAGCTTGTACACATAGCACATGCTCTCCTAGTCTCAGACTGCTCAGCTTCTGAGCAGCCACTATTACattaccattttatttatatcaaaaTATTTAGCATTACTTAACCTACCAACTGAACCTGAACTGTATATCACAAGAGAGATAAAGTTGGCTACAATTACAACAATATacataattctaataataaaacgaataaaataaagtgaactTGTTAGCTACTTTGCATTCAACAGATGACCcagaaaaacataacaatgcAGTGTTGTCTTGTAAGTCTTACAGAAAATACTGGGACTTCACCCTAATTTCACCAGCAGCTCTTATTCCATAGttgactgaataaaaataacagcaagTTCACAGGTGTAAGCAAATAACTAATGTATTTGTCTGCACACTAACCAGGCAGTTGTTTTTGTAGAAGAGCAGACTGTCTACCACATTATACATATGCCACTGCACTCTGAGTGAAAGCCATTGACACTCTGCTgtggaaaaacaataaaaggtCATTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28014 lncRNA downstream 45266 8432140 ~ 8435785 (-) True G23621
TU28012 lncRNA downstream 50357 8430480 ~ 8430694 (-) True G23619
TU28010 lncRNA downstream 50958 8429781 ~ 8430093 (-) True G23617
TU28008 lncRNA downstream 53726 8427121 ~ 8427325 (-) True G23615
TU28003 lncRNA downstream 63058 8417374 ~ 8417993 (-) True G23610
TU28050 lncRNA upstream 4333 8488514 ~ 8488758 (-) True G23641
TU28052 lncRNA upstream 4983 8489164 ~ 8489646 (-) True G23643
XR_004579952.1 lncRNA upstream 27126 8511307 ~ 8516859 (-) True LOC117599540
TU28192 lncRNA upstream 207758 8691939 ~ 8692150 (-) True G23758
TU28397 lncRNA upstream 425038 8909219 ~ 8990207 (-) True G23952
XM_026920277.2 mRNA downstream 129418 8343624 ~ 8351633 (-) True arl6ip5a
XM_026921551.2 mRNA downstream 215822 8260485 ~ 8265229 (-) False mitfa
XM_026921537.2 mRNA downstream 215822 8260485 ~ 8265229 (-) True mitfa
XM_026923857.2 mRNA downstream 487428 7991214 ~ 7993623 (-) True gpr27
XM_026929753.2 mRNA downstream 658993 7788563 ~ 7822058 (-) True gxylt2
XM_026912993.2 mRNA upstream 85166 8569347 ~ 8574762 (-) True gnat1
XM_034312653.1 mRNA upstream 85166 8569347 ~ 8572830 (-) False gnat1
XM_026937315.2 mRNA upstream 365801 8849982 ~ 8853110 (-) True inka1b
XM_026913318.2 mRNA upstream 376191 8860372 ~ 8915086 (-) True gnai2b
XM_026917064.2 mRNA upstream 437943 8922124 ~ 8953564 (-) False slc38a3b
XR_004580309.1 other downstream 215822 8262619 ~ 8265229 (-) False mitfa
TU26888 other downstream 2001040 6479402 ~ 6480011 (-) True G22591
XR_004577391.1 other downstream 2404174 6074035 ~ 6076877 (-) False LOC117596222
TU26421 other downstream 2944991 5534124 ~ 5536060 (-) False romo1
TU26420 other downstream 2945044 5534124 ~ 5536007 (-) False romo1
TU28673 other upstream 951382 9435563 ~ 9441810 (-) False tusc2a
TU28828 other upstream 1231346 9715527 ~ 9718970 (-) False tnnt2b
TU29080 other upstream 1379186 9863367 ~ 9868278 (-) False G24516
TU29342 other upstream 2005112 10489293 ~ 10490295 (-) True G24760
XR_003403751.2 other upstream 4754523 13238704 ~ 13238806 (-) True LOC113537313

Expression Profile