Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU28052 |
| length | 483 |
| lncRNA type | inter_gene |
| GC content | 0.36 |
| exon number | 1 |
| gene id | G23643 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 8489164 ~ 8489646 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU28050 | lncRNA | downstream | 406 | 8488514 ~ 8488758 (-) | True | G23641 |
| TU28040 | lncRNA | downstream | 5135 | 8479374 ~ 8484029 (-) | True | tcta |
| TU28038 | lncRNA | downstream | 5135 | 8479854 ~ 8484029 (-) | False | tcta |
| TU28037 | lncRNA | downstream | 5135 | 8481051 ~ 8484029 (-) | False | tcta |
| TU28014 | lncRNA | downstream | 53379 | 8432140 ~ 8435785 (-) | True | G23621 |
| XR_004579952.1 | lncRNA | upstream | 21661 | 8511307 ~ 8516859 (-) | True | LOC117599540 |
| TU28192 | lncRNA | upstream | 202293 | 8691939 ~ 8692150 (-) | True | G23758 |
| TU28397 | lncRNA | upstream | 419573 | 8909219 ~ 8990207 (-) | True | G23952 |
| TU28424 | lncRNA | upstream | 514643 | 9004289 ~ 9004512 (-) | True | G23973 |
| TU28428 | lncRNA | upstream | 530423 | 9020069 ~ 9021558 (-) | True | G23977 |
| XM_026921828.2 | mRNA | downstream | 5017 | 8481049 ~ 8484147 (-) | False | tcta |
| XM_026920277.2 | mRNA | downstream | 137531 | 8343624 ~ 8351633 (-) | True | arl6ip5a |
| XM_026921551.2 | mRNA | downstream | 223935 | 8260485 ~ 8265229 (-) | False | mitfa |
| XM_026921537.2 | mRNA | downstream | 223935 | 8260485 ~ 8265229 (-) | True | mitfa |
| XM_026923857.2 | mRNA | downstream | 495541 | 7991214 ~ 7993623 (-) | True | gpr27 |
| XM_026912993.2 | mRNA | upstream | 79701 | 8569347 ~ 8574762 (-) | True | gnat1 |
| XM_034312653.1 | mRNA | upstream | 79701 | 8569347 ~ 8572830 (-) | False | gnat1 |
| XM_026937315.2 | mRNA | upstream | 360336 | 8849982 ~ 8853110 (-) | True | inka1b |
| XM_026913318.2 | mRNA | upstream | 370726 | 8860372 ~ 8915086 (-) | True | gnai2b |
| XM_026917064.2 | mRNA | upstream | 432478 | 8922124 ~ 8953564 (-) | False | slc38a3b |
| TU28035 | other | downstream | 4983 | 8481051 ~ 8484181 (-) | False | tcta |
| TU28036 | other | downstream | 5050 | 8481051 ~ 8484114 (-) | False | tcta |
| TU28034 | other | downstream | 5135 | 8481051 ~ 8484029 (-) | False | tcta |
| XR_004580309.1 | other | downstream | 223935 | 8262619 ~ 8265229 (-) | False | mitfa |
| TU26888 | other | downstream | 2009153 | 6479402 ~ 6480011 (-) | True | G22591 |
| TU28673 | other | upstream | 945917 | 9435563 ~ 9441810 (-) | False | tusc2a |
| TU28828 | other | upstream | 1225881 | 9715527 ~ 9718970 (-) | False | tnnt2b |
| TU29080 | other | upstream | 1373721 | 9863367 ~ 9868278 (-) | False | G24516 |
| TU29342 | other | upstream | 1999647 | 10489293 ~ 10490295 (-) | True | G24760 |
| XR_003403751.2 | other | upstream | 4749058 | 13238704 ~ 13238806 (-) | True | LOC113537313 |
