RNA id: TU28428


Basic Information

Item Value
RNA id TU28428
length 1468
lncRNA type intronic
GC content 0.41
exon number 2
gene id G23977
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9020069 ~ 9021558 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAGATGTTGCAGTCTAGTTATCTGAATCCtggaaaagaaacaaacactttTTACGATATTAACTTTGACGCTGGGCTTCTGCTCAGCCCTTATCATAAATCAGAGTCTAAGTTTTTTGTAAATGCTGCTGAGAGAGGCTGCAAGGACACAAAtcccaaacattttaaaagtaaaaactttACCCAAAGTAAAAAAACTTACCCAAATGCAGTCATTTTTATTGATGCGACATATTTTAAATCAGATAATTAGGGCCCAAACCTTAAAATAGGTGTGTTTACAATGGAATCTGGAGAATCTGAACTTTTCATTTTAGAACTACTATAAAGAtgcactcactgagcactttattaggaacactatacaaatactgggtagggcctctgTTTGTTCTCAAAaaagcctcaattcttcatgtcatggattccacaagatgttggaaacattgctttgagattctggtccttgttgacatgattgcatcatgcaattcgtGCAGATTTTTCAGTGCACTTTCCTGCTGTGAATCTctcgttctaccacatcccaaagatgttctagTGGATgaagatccggtgactgggaaggccactgaagaacattgaactcattgtcatgttcatgaaaccagtttgagaagatgataatgcattatcatgctggaagtagtcattagaagatgggtaaattgtggccatgaagggatgcatatgatcagcaacaatactcaaataggctgtggcattaaAGTGATGATTGACTGGtgttaacaggcccaaagtgtgtcaagaaaacattccccacaccattacactacctccaccagcctggactcttgacacaaggcaggttgggttcatggattcatgctTTTGGTGCTAAATTCTAACCCATCTGTGTGCCTCGTGATTCAttagaccaggctatgtttttacAGCCTTCAACTgtcccactgcagcctcagctttctgttcttggctgacagaagtggagcCCAATgtgatctgctgttgtagcccatccgcctcaaggttcaacgtgttgtgcattctgagatgcttttctgctcaccacaattgtacagagtgcgtatctgagttactatagcctttCAGTcagccattctccgttgacctctctcatcaacgaggcgtttccatccacagaactgacactcactggatgttttttctttattgcaccattctgagtaaacttcagagactgttgtgtgtgaaaatcccaggagatcagctactgcagaaatactcaaaccagcccgtctagcaccaacaatcatgccacgctCAAAATTACTTTgctcatatttttccccatgattgttgatgtgaacattacccgaagctgctgggccatatctgcatgattttctgcattgcactgctgctgatTGCCTGATTTGACAATTgtatgaatgagtaggtgtacaggtgttcctaataaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28424 lncRNA downstream 15557 9004289 ~ 9004512 (-) True G23973
TU28397 lncRNA downstream 29862 8909219 ~ 8990207 (-) True G23952
TU28192 lncRNA downstream 327919 8691939 ~ 8692150 (-) True G23758
XR_004579952.1 lncRNA downstream 503210 8511307 ~ 8516859 (-) True LOC117599540
TU28052 lncRNA downstream 530423 8489164 ~ 8489646 (-) True G23643
TU28447 lncRNA upstream 48848 9070406 ~ 9070769 (-) True G23991
TU28529 lncRNA upstream 258364 9279922 ~ 9286655 (-) True G24073
TU28543 lncRNA upstream 308922 9330480 ~ 9330828 (-) True G24087
XR_003402903.1 lncRNA upstream 313110 9334668 ~ 9335327 (-) True LOC113527743
TU28667 lncRNA upstream 388350 9409908 ~ 9410303 (-) True G24185
XM_026915833.2 mRNA downstream 38048 8973169 ~ 8982021 (-) True rbm5
XM_026917064.2 mRNA downstream 66505 8922124 ~ 8953564 (-) False slc38a3b
XM_026917047.2 mRNA downstream 66505 8922124 ~ 8953564 (-) True slc38a3b
XM_026913318.2 mRNA downstream 104983 8860372 ~ 8915086 (-) True gnai2b
XM_026937315.2 mRNA downstream 166959 8849982 ~ 8853110 (-) True inka1b
XM_034299359.1 mRNA upstream 41967 9063525 ~ 9072606 (-) False si:ch211-161c3.6
XM_026912553.2 mRNA upstream 41967 9063525 ~ 9069558 (-) True si:ch211-161c3.6
XM_026912527.2 mRNA upstream 41967 9063525 ~ 9069557 (-) False si:ch211-161c3.6
XM_026912544.2 mRNA upstream 41967 9063525 ~ 9069427 (-) False si:ch211-161c3.6
XM_026932599.2 mRNA upstream 53354 9074912 ~ 9088027 (-) False mst1
TU28035 other downstream 535888 8481051 ~ 8484181 (-) False tcta
TU28036 other downstream 535955 8481051 ~ 8484114 (-) False tcta
TU28034 other downstream 536040 8481051 ~ 8484029 (-) False tcta
XR_004580309.1 other downstream 754840 8262619 ~ 8265229 (-) False mitfa
TU26888 other downstream 2540058 6479402 ~ 6480011 (-) True G22591
TU28673 other upstream 414005 9435563 ~ 9441810 (-) False tusc2a
TU28828 other upstream 693969 9715527 ~ 9718970 (-) False tnnt2b
TU29080 other upstream 841809 9863367 ~ 9868278 (-) False G24516
TU29342 other upstream 1467735 10489293 ~ 10490295 (-) True G24760
XR_003403751.2 other upstream 4217146 13238704 ~ 13238806 (-) True LOC113537313

Expression Profile