RNA id: TU28543


Basic Information

Item Value
RNA id TU28543
length 349
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G24087
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9330480 ~ 9330828 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAgacgcctgatctcaacccaatagagcatgcttttcacttactgaagacaagactgaaggcagaaagacccacaaacaagcagcaactgaaggtggctgcagtgaaggcctggcaaagcatctccagggaggaaactcagaatttgagttttgagaacatgggctccagacttcaggcagtcattgactgcaaatgactttcatccaagtattaaaattatggttatatttacaattatgacactttgtccaaatacctttgagcccctgaaaattgaggtactttgcttaaaatggctgtaattcctaaatggtaaatgccatattttttaaataaaataaagctga

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28529 lncRNA downstream 43825 9279922 ~ 9286655 (-) True G24073
TU28447 lncRNA downstream 259711 9070406 ~ 9070769 (-) True G23991
TU28428 lncRNA downstream 308922 9020069 ~ 9021558 (-) True G23977
TU28424 lncRNA downstream 325968 9004289 ~ 9004512 (-) True G23973
TU28397 lncRNA downstream 340273 8909219 ~ 8990207 (-) True G23952
XR_003402903.1 lncRNA upstream 3840 9334668 ~ 9335327 (-) True LOC113527743
TU28667 lncRNA upstream 79080 9409908 ~ 9410303 (-) True G24185
XR_004577036.1 lncRNA upstream 263668 9594496 ~ 9596485 (-) True LOC113532565
XR_003403357.2 lncRNA upstream 263701 9594529 ~ 9596485 (-) False LOC113532565
XR_004577037.1 lncRNA upstream 263706 9594534 ~ 9596485 (-) False LOC113532565
XM_034300325.1 mRNA downstream 11805 9098091 ~ 9318675 (-) False cacna2d2a
XM_034300328.1 mRNA downstream 11805 9098091 ~ 9318675 (-) False cacna2d2a
XM_034300323.1 mRNA downstream 11805 9098091 ~ 9318675 (-) True cacna2d2a
XM_026932599.2 mRNA downstream 242453 9074912 ~ 9088027 (-) False mst1
XM_026932517.2 mRNA downstream 242453 9074912 ~ 9088027 (-) False mst1
XM_034299674.1 mRNA upstream 79526 9410354 ~ 9421867 (-) False hyal1
XM_026927627.2 mRNA upstream 79527 9410355 ~ 9426556 (-) True hyal1
XM_026935683.2 mRNA upstream 98288 9429116 ~ 9432597 (-) True hyal2a
XM_026937121.2 mRNA upstream 104678 9435506 ~ 9441845 (-) False tusc2a
XM_034310483.1 mRNA upstream 104678 9435506 ~ 9441820 (-) False tusc2a
TU28035 other downstream 846299 8481051 ~ 8484181 (-) False tcta
TU28036 other downstream 846366 8481051 ~ 8484114 (-) False tcta
TU28034 other downstream 846451 8481051 ~ 8484029 (-) False tcta
XR_004580309.1 other downstream 1065251 8262619 ~ 8265229 (-) False mitfa
TU26888 other downstream 2850469 6479402 ~ 6480011 (-) True G22591
TU28673 other upstream 104735 9435563 ~ 9441810 (-) False tusc2a
TU28828 other upstream 384699 9715527 ~ 9718970 (-) False tnnt2b
TU29080 other upstream 532539 9863367 ~ 9868278 (-) False G24516
TU29342 other upstream 1158465 10489293 ~ 10490295 (-) True G24760
XR_003403751.2 other upstream 3907876 13238704 ~ 13238806 (-) True LOC113537313

Expression Profile