RNA id: TU28742


Basic Information

Item Value
RNA id TU28742
length 3341
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id LOC113532556
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9615587 ~ 9620959 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCCATATTGTTAGAAAAATTCAAACCGTACTTGAGAAGTGAAGACTTTGCATCGTCTGATACTGACTGCAACTTCATCAGATTTCATCCATGACTGCTTTCGTGTATTCACAGCAAGGCTGAGCTCAATCATTTCATACAACTTGTTTGTATAATGGCGGTCAACAAAGCACTTCACAAAGATGAGGTAAAGGAACGTATATCGTTTACTGTAAAAGCAACAAAATTCATTTCGTGTGTCGTCTAATAAATTGCAATGTAGAGATCTTTAAAACAAACGGTAAGTGCCTTTTGACTTATAAACAACAAAGCTGACAGGATAAACGTAAAGATAACATAGTCTATTTCTCTTGGCACTGAGAGCTGTTAAGGTAATCTCTCTTCTTGGGCTGATATTTAACTAGTATTGCTGAACCAAATGTGTAAAGAGAGGAATTAACTCTTCTAATGCAACAGGCAGCTTTGGAAAACAATAGTATTGATGGAATTAGCGTAATATAACAGATCTATAACGGAAAGcgtgaaaaaagaagaaaccgTGAATTAAGTTGATTTATACTGATCCATTCTCTAACATTACAGCTGTCGATGATGCTTTCAAGTGTTTAATATCTAAACAGCAGCTTATTTTTGATCTCACTAATCATGCATTACATGCGTACAAAAATGTAGAGTTCATCATTTGAGGTGCATATACAGAAAATACAAGATTTTGTTATGTACGCACATCCCTTAAATTCACATATATTTCCTTCATAGGAATTTCTATTCGTATTTCAGATAAGTCTGCTGGATTTGTGTAATGCAGATTTTTCGTGCGTGAACAAGTGGCTGTTCAGTACTTATTGCCAGCATAGTGTTTACAAGTACGTTCTACACAACACATAGCAGGATTAACTACTTTATGCAGTTTTTCTATAGCATAAAAAGGATCAGTCGTCCAACCATTACCATGCTATCACAAAGCGGAGAAAAAATGGGCGTATAATGTTGTCCAAaaaatggagatggagagagcaggagagataAAGGGCGGGGTGACAGGCAGAAAATGAGAAGGATTTCCCCTCCCCTCTGCTATCCTCAGATGAACTTGTCGTGTTACTTCATGATATTTTCTTTCAGGCCTGCCATCTCTACTTCCTGCTATTTTTGTGTCCCCTCCTCccccctccctctttctttctgcctctgTCTTTGACTATTAGTGGTGTGGTAACCAGGAATAAAGTCACACTTCCTTTATCAGGAAACACATTTCAGCTATGGAGTTTGATTAAAACTGAActataccatttttttttctatttggaAAGATTCCTAAACCTTGgatatgtatttattatgtgtCTAGCTGAAACGTTTATAGGTGTTGGTAATGGTTCCAGTATGATTTTAGACAATGTTAGTCAAATTCACTAAAATGTATCCAGAGATACAGGAGTATCAGCTTCAGTACTGGAGGAATTTCCTCTTTCCTGAACAGATATAGCATTACGGATCATTTTCAGAAACAAGAATATGACTTCTGTGAAGGTTTTGGTGTCTAATCTGACACCACAGAGTAACACTGACAAACCTTAATTTACAGCTTTTGCCCATGTGCAGAATGAGCTGTTTTACTACAGCAAAAGAAGAAATTAGTCTTGATAGCTTCTTTTGTTTGTTGAGCCACTATCAGAGTGATAAGAGATGAACTTGGAGACCTCCACGCACACAGGACAGAGTCAAACTAAGTCGGCAGAAGGCAAACTTCCTGTTTAGAGATGCTATTTTTGTGTGCAGGGCGGTTTCCCTGTTACTGCTGAATGATAGAAAGACTAACAAAAATTAACCCTTGTAATATTATGGCTTTGTTTAGTGGCagaaaaaatgaatcaattccATCTGAAAATCTACAGCTTTGAACAGTGCAAAAGATTACTGCATTTGAATATATGATGGATGAATATGTTTATTCAGAAACTTATTAGTGGATTGCTAAATCAGCCTCCATATTTATTTTGTCACAGCAAAATCAGTGATTGGTGTTCGAATGGGTTTGTATATTGAACATGAACAGTTAAAGTAATCAGTGGTTCAGTTCAAAACTTGCAAATCTATTGATCCAGGCAGTTTCACGAGGGCTCTAACAGGGCTGTTGTAAAAACCTGTTCGCTTATCACTTTCTCTTAATAAAAGGTCAAAGGTGAAACAGCCTTCAATTCGGTTCATGTTGAAAATGTTACACAAGGAACCTTGAACAATTTGTTTGCACAGTAAAAAGCTGCCAAATAATAGTATtacactgtcatttttttaatctgcatttTAAGCCAATATTTTAGAATAGGTGCAAAAAGATTTCAGATACAAATAAATGAGAAGATAAATATCCATTTGAGTATAATTTCAATTATTTGTTCAGGAAAACATTGTACAGCTAACATATAATATCTCTCACCAAAGTGTATGATGACATAGGAAGTACTGCGTGCAGTGACCCATGAGCTTCAGTGAGACATGAAtcataaaaaaacaactcaacAACTCAACTCAAAAAAAAGTAGGCTACATCAAAACACTGCACAGACTGTAAGTCAAATAAACaatgttttgaaagaaaatactTTTAGAAGAAATCTGGAAAGATTTGCATTATATGCATTACACTTCTTAAAGACAATTAGGTGACACCATAAGGCGTTATTAAATTGCCTGCATATTAAATATGCCTGCATTAATAAATTGCTCTTTGCACTTGAGGGGTTAAGGCCTAAAAACTGCCTCTTAAATGGTGAGTGCTTATGAGCAAAATACCAACTGTTCAAGTTTATAGTTTCTGTCCATCTATTTTAAATCTGCATTCTGAAGCAGTGTTAGCTGCATTCTTCTTTGACAGCAGTTTTCAAAATGGTCTGATTTtgatatttgcattttatattgcAGACTTGATACCATTCACCATCGAACTGATTCAACATCTCAATTAAGAGGTTTCTATTTGTCCTCTTCAAGCACCACCCCCCGCACTCATGCTGTTCTTTCCACCCTATCGAGTAGAGGGCCGCCTTTTCCTCCGCCAACTGCCATGCCAAAACATTTCAATCACTGCCCCCATTAATTAGGCCAAAGAAGAATTTTGCATGTTAATGAGCTACCATGGTGCTTTTCACTGTCTCTGGTTCACATGCTAATTTATGCAAAGTGACAGGGCAACTGCCCTACCCCTCCTTGCATGCCAGTCAATTGTTTGGACTGCTCCCATGACCCTTGTCTGCCACCCTCCTTGGGCACAGCTTCATGCCAGAGCTGGGCATTGTCTAACTGCCTCAGCTGCCACTGCAGACACCGAGTTAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403358.2 lncRNA downstream 171 9612390 ~ 9615583 (-) True LOC113532571
TU28740 lncRNA downstream 3105 9612380 ~ 9612649 (-) False LOC113532571
XR_004577036.1 lncRNA downstream 19269 9594496 ~ 9596485 (-) True LOC113532565
TU28748 lncRNA upstream 16760 9635854 ~ 9636519 (-) True G24260
TU28757 lncRNA upstream 56428 9675522 ~ 9675739 (-) True G24268
TU29081 lncRNA upstream 244273 9863367 ~ 9868278 (-) True G24516
TU29083 lncRNA upstream 244273 9863367 ~ 9868278 (-) False G24516
TU29143 lncRNA upstream 319162 9938256 ~ 9939043 (-) True G24572
XM_026922310.2 mRNA downstream 28436 9583921 ~ 9587318 (-) True sys1
XM_026941321.2 mRNA downstream 38766 9570763 ~ 9576988 (-) True snrpc
XM_026919948.2 mRNA downstream 78850 9519378 ~ 9536904 (-) True ilrun
XM_026919936.2 mRNA downstream 105990 9500833 ~ 9509764 (-) True LOC113530144
XM_026932014.2 mRNA downstream 144398 9468540 ~ 9471356 (-) True rps10
XM_034312340.1 mRNA upstream 96422 9715516 ~ 9726051 (-) False tnnt2b
XM_026913751.2 mRNA upstream 96422 9715516 ~ 9726050 (-) True tnnt2b
XM_026913744.2 mRNA upstream 96422 9715516 ~ 9726047 (-) False tnnt2b
XM_026913735.2 mRNA upstream 96422 9715516 ~ 9726046 (-) False tnnt2b
XM_026930147.2 mRNA upstream 123937 9743031 ~ 9749764 (-) False tnni1b
TU28673 other downstream 173944 9435563 ~ 9441810 (-) False tusc2a
TU28035 other downstream 1131573 8481051 ~ 8484181 (-) False tcta
TU28036 other downstream 1131640 8481051 ~ 8484114 (-) False tcta
TU28034 other downstream 1131725 8481051 ~ 8484029 (-) False tcta
XR_004580309.1 other downstream 1350525 8262619 ~ 8265229 (-) False mitfa
TU28828 other upstream 96433 9715527 ~ 9718970 (-) False tnnt2b
TU29080 other upstream 244273 9863367 ~ 9868278 (-) False G24516
TU29342 other upstream 870199 10489293 ~ 10490295 (-) True G24760
XR_003403751.2 other upstream 3619610 13238704 ~ 13238806 (-) True LOC113537313
TU31648 other upstream 3879511 13498605 ~ 13499984 (-) False slc5a8l

Expression Profile