RNA id: XM_026913751.2


Basic Information

Item Value
RNA id XM_026913751.2
length 1269
RNA type mRNA
GC content 0.41
exon number 13
gene id tnnt2b
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9715516 ~ 9726051 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAGGCATGTGTGCACTCATACTACAGAGTGTTTTACTAACTATGTAAAGCCCTAAAGTTAGTCATGTGATACAAGGACAGTTTATAAACCAGTTCAGATTGAATCAGGGGGTATTGTAACCTTTAAAGGATCCCCCAGACCTACAGAACACAAAGGCAGGTCTTAGTCCAAAAATGTCAGATACAGAAGAAGTTGCATATGAGGAGAATGAGGGTGTGACCACGGAACATGGAGAAGAAGAGGCAAAACCAAAGCCAAAAGCTTTTCTGCCACCCATGGTCCCTCCCAAAATACCTGATGGGGAGAAAGTTGACTTTGATGATATCCACCGTAAGCGCATGGAGAAGGACCTGACAGAGCTCCAGTCCTTAATTGAGGCACACTTCGAGAGCCGcaaaaaagaagaggaggaatTAATCGCTCTGTCCAGTAGAATGgaaaaacgACGGACAGaaagagcagagcagcagagaATCCgtgcagaaaaagagagagagcgtcAGAACAAGCTGGCGGAAGAAAAGGCAcggaaagaggaggaagaggcaaAGAAAAAAGCTGAAGATGATGCCAAGAAAAAGAAGGTTCTGACAAGTTTACAGTTCAGCGGATACATGCAGAGGACAGACAAGCGGGGAGGACAGaggaaacaaacagagagagagaagaagagaaaaattcTTAGTGAGCGGCGTAAAGAGCTCAACGTTGAAGATCTGAATGCTGAGAAGCTCAGAGAGAAAGCCAACGAACTTTGGAAATGGATGTACCAACTTGAGGCAGAGAAATTTGAACtgcaatacaaatatatacatcaGAAATATGAGATCACCGTTCTGAGAAACAGGGTCAGCGACCACCAGAAAAATACCAAAGGGCCCAGGAGCAAGAGAGGTTTGAGAAAATAGAAGACCATCACCGGTGAAATGTTTTAGTTTCAGTGTGGCAAACATAACCTTCATCCATGACCTTCTTGAGAACAAACACGGTGGTGACATGGCAcaattgtgattaaaaaaaattaaggaaacTGCATATGACTACATTTGATTCTAAGCAATGTATATTCTTAGTAAAGGtaatctggatttttttaaatttagtaatAAGTTCACAGAAGAGAAATTTATCTAAATCTGAATGACTTGAGCAGCTTTCTGATTGTAAGAACGTCACTAGTTTGTCCAATGTGACCGTATTCACATTAGTAACTACACATCCATAACCACAGTTGCACATTGTAAACCAATAAATCATGATGAAAGTT

Function

GO: NA

KEGG:

id description
K12045 TNNT2; troponin T, cardiac muscle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28757 lncRNA downstream 39777 9675522 ~ 9675739 (-) True G24268
TU28748 lncRNA downstream 78997 9635854 ~ 9636519 (-) True G24260
XR_004577035.1 lncRNA downstream 94557 9615587 ~ 9620959 (-) False LOC113532556
TU28742 lncRNA downstream 96422 9615754 ~ 9619094 (-) True LOC113532556
XR_003403358.2 lncRNA downstream 99933 9612390 ~ 9615583 (-) True LOC113532571
TU29081 lncRNA upstream 137317 9863367 ~ 9868278 (-) True G24516
TU29083 lncRNA upstream 137317 9863367 ~ 9868278 (-) False G24516
TU29143 lncRNA upstream 212206 9938256 ~ 9939043 (-) True G24572
TU29184 lncRNA upstream 425767 10151817 ~ 10152165 (-) True G24611
TU29190 lncRNA upstream 434982 10161032 ~ 10161241 (-) True G24617
XM_026922310.2 mRNA downstream 128198 9583921 ~ 9587318 (-) True sys1
XM_026941321.2 mRNA downstream 138528 9570763 ~ 9576988 (-) True snrpc
XM_026919948.2 mRNA downstream 178612 9519378 ~ 9536904 (-) True ilrun
XM_026919936.2 mRNA downstream 205752 9500833 ~ 9509764 (-) True LOC113530144
XM_026932014.2 mRNA downstream 244160 9468540 ~ 9471356 (-) True rps10
XM_026930147.2 mRNA upstream 16981 9743031 ~ 9749764 (-) False tnni1b
XM_026930138.2 mRNA upstream 16981 9743031 ~ 9749764 (-) True tnni1b
XM_026921922.2 mRNA upstream 26571 9752621 ~ 9756596 (-) True csrp1b
XM_026920191.2 mRNA upstream 216005 9942055 ~ 9954145 (-) True LOC113530316
XM_026920200.2 mRNA upstream 216005 9942055 ~ 9954144 (-) False LOC113530316
TU28673 other downstream 273706 9435563 ~ 9441810 (-) False tusc2a
TU28035 other downstream 1231335 8481051 ~ 8484181 (-) False tcta
TU28036 other downstream 1231402 8481051 ~ 8484114 (-) False tcta
TU28034 other downstream 1231487 8481051 ~ 8484029 (-) False tcta
XR_004580309.1 other downstream 1450287 8262619 ~ 8265229 (-) False mitfa
TU29080 other upstream 137317 9863367 ~ 9868278 (-) False G24516
TU29342 other upstream 763243 10489293 ~ 10490295 (-) True G24760
XR_003403751.2 other upstream 3512654 13238704 ~ 13238806 (-) True LOC113537313
TU31648 other upstream 3772555 13498605 ~ 13499984 (-) False slc5a8l
TU31814 other upstream 3906212 13632262 ~ 13634652 (-) False rps26l

Expression Profile