RNA id: TU29081


Basic Information

Item Value
RNA id TU29081
length 4468
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G24516
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9863367 ~ 9868278 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAATTGAAggcatgaatttatttttaataaacactgaaacGTTTCCCTTTTTCTGCAGATGATCCCTTTAACAGGCAAAAACTTGATCAGTCTTAAACATAAGGACAGTGCCAGGTATCAGAAGatacatacataaatagaaacaaataaacagttGTCTCAACCATAGGCAGTCGATGATATACCTATATAATAGATGTGCTCTATTTGTGAGTCGAAGTGTTACACAAGAAAAAGACTGgttatttcttttatatgtacagttcattacattttttttttttttgcgtcaGCAACCGGTGTCTTCAAAATCctaaaaaaaggaatgaaaaccTCATATCAGATCACATTTGACAACAAATCATCATATTACATGTGTTATATTTGACATGACGCTCTATAGACAGAGTGAGCACAAACGTGTGGCTTTACCTTTTGAGCAAATTGTGATCCTGATGCTCCTAATTTAGGACTGGAACAAATGTAGGcagaaatgttaaacaaacaggTGTAAATGGCCTCTAGCAATAATTATGACAGCTGAAGCAACATAAATTGTGGTGGGTTTTACCTTTGTTTGGTTCAACAGctataaatgaaacattatcAAAactaactttctttctttctttctcttaaagCAATTTCAtacacattaacattattacaACACAATATTCACTCCACGAACCTAACAAATGTGATTCCTCCCTCACagagaatttatttttcatgccGTGAATGTAGGCAGAAGAGTTTATTAGTGTAAGAGCTTCCAGCGAGTGATGGCTGGCTCCCTGGGGCCTAATGGGGAGCTGGGTGCTGAATCAGGGAAATGTGATTTCCTTCCCTGTTGTACACATATGGAGCCACACCAGATTTAATTTACATAGCAGTAGAACTCTGAACCTTGCAGCGGCAGAGACTGTGCAATCCAAATTTAGCACCCACCATATAAGGTCGGCACATGGGGGATGGGGTCAAGGGAGACAGTTGTCAAGACCCAAATAGATGTAAAGTCCTTAGGACTCTAAATTGCTTATCTGGAACACCTCGGCCTATTATGGCCAGGCAAATATTAGACCCTTGAGGATCTTgagtaataattataaaaaatgcTCACAGTGGAAGAGGAATTGATCGGGATTCACTATCACATTTAGTGACAAAGTGACAAGAAATAGAGTATATCTAATCATTTATGTGAGATATTATGTGCTGGGGTAAGGAACAAACATTAATCTGAGCCACACTACAGACACTGACCAACATGAACATGGCTCTTTACCTTATTTCTTATCAGCATCAGGAATCAGTGCTTCTGTAGGGGAAGAAAAAACATTCTATGTTAGACTATGTAGAAGTGAGTACAggtgggcatgctgttataggaaaataatccacgactGGGTGGTGCGATATGGCCTGATGCAaagtggagtcactgttaccacctgaagtggattattttcctgtgacaCCATATCTAGAAGTTTTTacttctcttacaccacagcaattttttatttattaacaaacaccattttgtgctttttaactgtttagaGTTGTTGTGGAAGATCCATGGggcaagttacttcctgttatcacttacattatagcatctataaacaATTGTACCGGCACAAGACGCTCAATTTAATCATTaagttaaaatgacaaaaatgcagcttgtcatgttaccaagaaaccggaaTGTGCGAAGCAgagctctgtcctgaagaccttcccgTGTTACTAAGCACTGATACCcgggactccttccataaatgttaaataaatctatttacagaaagcttcacaataTCCATAGTTAtacattttcctttgttaaataacaaaggGTTTTTAATCTGtactttaattaatataaacctgtgatctgaattacCTCCAGAAATACTGTCAGATCTGGGCTgttcagattcaagaattcaacagcattgtggtattTAACTGCTAGTAACAACTATAATATATTTCTTAACCTAATGACTTATAtcagtttattatatattatataggaGATCACCAAATCTGACTAATTCTCCATTtgtttaatgcaaaaataaccaTCAAAGTGAGTGTGGTCCCTATTTGTTTTGTCAGCTGTAGACAGTCATTAAGCTCAGACACTATGCTAAAACCCACTGCAAAAACAAGCCATGCATTGTTTATTAACACCTGTTACACTTAATTGGTTTACTTACGTTTGACCTCCAGCTTGCAGGTGACAACCGCCTCACCATGTTCATTGATGGCCTTGCATGTGTACACACCACCATCGAAGTTACCAGGCTTGCGGATCTCCAGACTGCAGATGCCCTGGTTGTTTATCTGCCTGTACTTGGGGTCATCACCGATGATCATCTGGTTCTTCATCCACTGAATCTTGGGCTGCAGAGAGGAAAGGGagatgaaaaggaaaataagTGATTTGGTCCATACTCCTTACAGAGATACAACTTTACTGTTATCTCTTAAAAGGATATGATTCTGAAAAGTATTATTATCTGTTGATAGCTTGTTGATGGATGAATTTAAGTGACATAGTTCCAAGAGCCCTACTGTGCATTCCTGCTATACTCACTTGTAAGAGGCCTTGGGTGTTAAATAGCATGATCACTGTCAGGGGCCTCTCTTGGCTACAAGCAACAATGCCACTCATCCAGTTCTCACCAGTGTGAATTTATTCTATTTAATTTCTATCTCAAGGGCTTTTGCTATCCGCTAAGATGAGCTGGCTGCCAGCTTCCAGTGGCCATTCAAATTTTACCTTTACTACCACACACTGGTGGGTTACGGCTACCTGTACATCACATGATATTAACAGATAGACACATATCTATAATTTCCGACTTTTTGACAATGTTCTAGTCAATCTAGTCAACCCTCTAACTTCTGCACTGACTTGCTCAAGCCATGTCCTCCTATAGGCAGACTAGTCTGAATTAAAGCAGTGAGGTTGAAGTGAGCCAACATGCCTTAGGGAATCCTCTGACGGAGCATAGCAGCTTGGTGCTGTAGCCCACAGTGGTGCAGCGGTCTGGCATGCCGGTGGTGAACTTGGGGGCCTCGCTGAAGTTATGTTCCTTGTAGTCTGGTGGTTTATAGTCAATACCTGTCTGGATGGTGGCAGAGGTCTTTGTAACAGTGGCATTCTCGCTGATTCCACACTTGTTCTCAGAGAAGACCCTGAAAGCATAAGTATTTCCCATGATCAGGTCTGAGACAGTGGCATTCAGCCTGTGATAGTGTTCCAGCACTGTGAACCAGTCCTGTGGAGAGGAATCAACAACACTGGATGAGTACAAATTATTGATAAGCATTATATGGGCCAAGTCTAATATTCCTAAATAGCCAGTAATGCATTTCAGTAAGCAGTAAAGGACTGTCCTTTATGcacaaaatatgattaaaaactcagcaaactggataaaaaaaactaaatgtcaGCTTACCAAGAGTTGTGATGAAGCACTTTTAATATTACAGATTAGAGTTAATAAAATGAACTCAAATAAGCCAATGAAGACTCTGAATTTACATTCTcaataaatgactgaatgagtatgtattttatatttcctatagcttaaaaaaaattcccttgTAAAACTGAAATAGTAGAAGAGGACTTATGTATAATAAGGAGAAGCCCTTACCCCAGTCTTTTTGTCAGCCTTCTGCACTGTGTATCCAGTGATAGTTGTGTTTCCATTATCCTTCGGCTCGGTCCATTCCAAAGCAACATTGAACCCCCAGGCGTCCACAATCTTTACGCTTGCTGGTGGACCTGGCAGTTCTGTGATTCAGCACAAACCGTATCATGttgaaaaatgacacatttcatGAGAACACCTTAGCAGAGCCAAACATGAACAAAGTACTAACATTCTGCTTAAAAACATAATGTGGCATCATAAATTTATATCATTTTGTAAacttaaaacatttacagaattgGAAATAGGAATGGGTTAGGGTTAACCTTAGGGTTAAAGTGTGGACTTAGCTTTTGCAATGTTTCTTGTACCTTAATGTGTGAGAAGTCTCTCACTAAAATGTTGAAATGCTCCTTATCAATTTTCTACAATGTCTTACCGAGATCAGGTTGGAGAAACAAACTATGACAACATAATCAAACCATCAACAGCTCTTAGCCTATGAATctcagaagaaaataaatggcAGGAAATATACTGGTGTTAAATCTTGGATCATGATGCTAAGCCACAAACTCTAAGCTCACCAATAATCTGCAGAGTCAGCTGGGCTTTGTCTTCAAAGCTGTCCACTTTAACACACATCTCATAGACACCAGAGTCAGCTCGCTCAGATGCACGGATGAAAAAGATGCTGTCTCTTTCACTGTTGCGGATATTCACCCTCTTGGTGTCAAGGGGCTGTCCATCCTTTGTCCAGGTCACAACAGGCTGGGGTTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28757 lncRNA downstream 187628 9675522 ~ 9675739 (-) True G24268
TU28748 lncRNA downstream 226848 9635854 ~ 9636519 (-) True G24260
XR_004577035.1 lncRNA downstream 242408 9615587 ~ 9620959 (-) False LOC113532556
TU28742 lncRNA downstream 244273 9615754 ~ 9619094 (-) True LOC113532556
XR_003403358.2 lncRNA downstream 247784 9612390 ~ 9615583 (-) True LOC113532571
TU29143 lncRNA upstream 69978 9938256 ~ 9939043 (-) True G24572
TU29184 lncRNA upstream 283539 10151817 ~ 10152165 (-) True G24611
TU29190 lncRNA upstream 292754 10161032 ~ 10161241 (-) True G24617
TU29193 lncRNA upstream 299933 10168211 ~ 10168469 (-) True G24620
TU29196 lncRNA upstream 302692 10170970 ~ 10171175 (-) True G24623
XM_026921922.2 mRNA downstream 106771 9752621 ~ 9756596 (-) True csrp1b
XM_026930147.2 mRNA downstream 113603 9743031 ~ 9749764 (-) False tnni1b
XM_026930138.2 mRNA downstream 113603 9743031 ~ 9749764 (-) True tnni1b
XM_034312340.1 mRNA downstream 137316 9715516 ~ 9726051 (-) False tnnt2b
XM_026913751.2 mRNA downstream 137317 9715516 ~ 9726050 (-) True tnnt2b
XM_026920191.2 mRNA upstream 73777 9942055 ~ 9954145 (-) True LOC113530316
XM_026920200.2 mRNA upstream 73777 9942055 ~ 9954144 (-) False LOC113530316
XM_026922415.2 mRNA upstream 110595 9978873 ~ 9982851 (-) False ube2c
XM_034310863.1 mRNA upstream 110595 9978873 ~ 9982280 (-) True ube2c
XM_026926845.2 mRNA upstream 114787 9983065 ~ 9992886 (-) True LOC113534196
TU28828 other downstream 144397 9715527 ~ 9718970 (-) False tnnt2b
TU28673 other downstream 421557 9435563 ~ 9441810 (-) False tusc2a
TU28035 other downstream 1379186 8481051 ~ 8484181 (-) False tcta
TU28036 other downstream 1379253 8481051 ~ 8484114 (-) False tcta
TU28034 other downstream 1379338 8481051 ~ 8484029 (-) False tcta
TU29342 other upstream 621015 10489293 ~ 10490295 (-) True G24760
XR_003403751.2 other upstream 3370426 13238704 ~ 13238806 (-) True LOC113537313
TU31648 other upstream 3630327 13498605 ~ 13499984 (-) False slc5a8l
TU31814 other upstream 3763984 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 4005436 13873714 ~ 13907189 (-) False lhfpl4a

Expression Profile