RNA id: XM_026916042.2


Basic Information

Item Value
RNA id XM_026916042.2
length 5119
RNA type mRNA
GC content 0.44
exon number 24
gene id itcha
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10916042 ~ 10934164 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCCGTCACCAACGTCACGGTTTAGGGAGTCACGTGACCGGTAAAGGCGGCCGTGTGGAGGACCTCTGGTCAATGGAATAAAACGACAAAATGTCTCAAGAGGTGGGAGTCTGTTTTCTCTGCAGCTGCTGAACGTCAGGCACCACATACCTTCATTAAAAGCAGATGCATCTGAGCCATAGCAGCTACTGTTAATGGCTACACAATGAAGGCCCAATTACAGATAACAGTTTTGTCAGCTAAGCTGAAAGAGAACAAGAAGCACTGGTTCAAGCCTAGTCCGTATGTGGAGGTAGCTGTAGATGGCCAGTCAAAGAAAACAGAGAAGTGCGCCAACACACTCAGCCCCAAATGGAAGCAGCCCCTCACAGTAATCGTTACCCCTTTCAGCAAGTTAATTTTCCGTGTCTGGGGTCATCAGACTCTCAAAGCAGACATTTTATTGGGAATGGCAACTTTAGAAGTCAGTGAGACCCTCAAATCCAGTGACATGAAGATCCATGAGGTGATACGGACTCTGCCTCTGAGTGCAGATACAGATGGCAGTGACTTGGTGGGagatctgtctgtgtgtctggaTGGAATGCAGGTGGATCCTGAAATATTTGCTTCCGAGGAACAGAAGCACAATGGTCCACCAAATAGGGAATCTAAGCAAGAGGCACCTGGAAGATCGAGTCGAGATTCTTCACCCTCCAGTGACCTTGCTGATGATTCTTCACTGCCCAATGGTCATGCTGTGGGAAGTACAGGGTCTCCTTCAACTTCGACAGGAGCTCTGAGACCCCCAAGGCCCCCTAGACCCCAGAGACCACCTCCTCCCTCCCCCCAGAGACCAAACTCTTCCACAGCCTCCTCTACTGGCTCTACTCCAACCCATGGCAGTGGTGGCCCAAGTCCAGACTCATCCCCGCGCTTATGTGTGAATGGAGAGGCAGCAAGCCAGGGATCAAACTCAGGTTCAGGGTCAGCCCTAAGAGTGAGCCCCACTCCCCGCAGAGTGTCTCCCATCAACAACGGCCCACTTCCTCCTGgCTGGGAGCAGAGAGTGGATCAGAATGGTCGTATCTACTATGTGGATCACATTGAGAAAAAGACCACCTGGGAGAAACCTGAACCTTTGCCTCCTGGCTGGGAGCGTCGTGTGGACCCGATGGGCCGAGTGTATTATGTGGATCACATTAGCCGGAGCACCACGTGGCAGCGGCCCACTGCAGAGTCTGTGAGGAATTATGAGGAGTGGCAGAGCCAGCAGAGCCAGTTACAAGGAGCCATGCACCATTTCAACCAGAGATTTATTTTTGGgCAACAGGATCAACTAGGGACAACTCCTAATAAAGAGTTTGATCCACTGGGTCCTTTACCACAGGGATGGGAGAAGCGAACTGACGCAAATGGGAGAATGTACTTTGTTCATCATCCTACACGTTCAACACAGTGGGAGGATCCTCGTACTCAGGGGTTGTTGAATGAAAAGCCCCTGCCAGAAGGTTGGGAGATGAGGTTCACAGTGGATGGGATTCCATATTTTGTTGACCACAACAGGAGAACGACCACCTACATCGACCCTCGCACGGGCAAATCCTCACTAGAGAATGGCCCTCAGATTACCTATGTGCGTGACTTTAAAGCCAAAGTGCACTATTTCCGCTTCTGGTGTCAGCAACTGGCAAGGCCTCAGCACATCAAAATTCATGTCAGTCGCAAGACACTGTTTGAGGATTCCTTTCAGCAGatCATGACCGTCCACCCACAAGAACTGAGACGAAGACTATGGATCATCTTTCCAGGAGAGGAGGGACTGGACTATGGAGGAGTAGCTAGGGAATGGTTTTTCCTGTTGTCTCATGAAGTTTTGAACCCCATGTACTGTCTTTTTGAATATGCGGGTAAAGACAACTACTGTCTGCAGATCAACCCCGCCTCGTCCATCAACCCAGACCACCTCAAATATTTCAAGTTCATTGGAAGATTTATTGCCATGGCTCTGTTTCATGGGAAATTCATAGACACTGGCTTCTCACTGCCCTTCTATAAGCGGATCTTGAACAAGCCTCTGGCTCTGAAAGACCTGGAATCCATTGACCCTGAGTTCTACAACTCCTTAATCTGGATCAAGGAGAATAACTTGGAGGAGTGTGGGCTGGAGATGTATTTCTCGGTGGATAAGGAGATCTTGGGTGAGGTCACTACTCATGAGCTGAAGCCAGACGGCGGAAACATTCTTGTAACTGAGGAAAATAAGGAAGAGTATATCAGgCTGGTGGCAGAGTGGAGGTTATCCAGGGGGGTTGAGGAACAGACTCAAGCTTTCTTTGAAGGTTTTAATGAAGTCTTGCCTCAGCAGTACCTGCAGTACTTCGATGCCAAAGAGCTGGAGGTGATGCTGTGTGGAATGCAGGAGATTGATCTTTCAGACTGGCAGAGGAACACAATCTACAGACATTATGCTCGCAGCAGCAAGCAGATCATCTGGTTCTGGCAGCTTATGAAAGAAATGGACAACGAGAAGAGGATGCGTTTGCTACAGTTCGTGACTGGGACTTGCAGGCTTCCTGTTGGGGGGTTTGCTGACCTCATGGGGAGCAATGGGCCACAGAAGTTCTGCATCGAAAAAGTGGGAAAAGAGAACTGGCTTCCCAGGAGCCACACATGTTTCAACCGTTTGGATCTGCCTCCCTATAAGAGCTACGAGCAGCTTAAAGAAAAGTTGATGTTTGCCATCGAGGAGACAGAAGGCTTTGGCCAAGAGTGATGCATACATCCACACCCCTGCATGTCCTCTGCACGTCTCCATGGCAGCAGCTTACCATTCAGACTTATCTGAAAGAATGCTGCTGAACGAATGAAAGAGATGAcgtgagaaaagaaaaattcttGAGAGCACCATTCCTTCATTACATCACCAAGGCTCACATTTCCCCTCTGATTTCAGATGCACTGTTTGAAATTTCACTCTTTTGTGGTAATGCTGTCTTCTTTAGTCATCTATGCACCAGAATGCCTGGGCTTAAATAAACTAAACCCCACATAAGAGACACATGcgcatatacatacacacatacatgcacacacacacacacacacacacacacacacacacacacacacatacacactgtccAGGCTATGCACCCCGGTTGGCTGGATTCACCATTAGTATTTTACAAGActgttttcctgtttgtttgtttttttgttttgttatgttatgttttgttttaaccGTATACCTGACTCGTTTACAGTTGGGCACTTGTTTTTCTGGCAGCACTTACAGTAGTACAACTGTATGCATgaatattcaattttattttatgggcTCTCAATCATTTAGGTAGCTGTCTGAGTCTGCTGAGGTATAGAATTCCGATCAGAAAGTTTTCTCACTGATAAAGCACTTTGAGATATGAGCTCAATGGCTAAGAAATTTGCCTGAGGTGATGATAGTCGATAAGCATATAAGGCATTGGGTTAGTAATTAAATCTCTTAAGAAAACCTGGAGAGAATCAGCATCTAGTTTTAATCTCCAGGTGACTGGAACCAACTTTCCCATTTTAGAAATGGGTGCATGCTTTTAGTGCAAGTTAAGTCATCTGCTTTTAGTGAACCAAATTACCCTAACATGTGAAAGGAGTTGGGATGTAATGGTCCAAGTCTGGTTTACTTGTATCTCAAATAATATACAAATCCCACATCCTATTTTCTGagaatttttcaaaaatgagCAAGGCTGAACACGAATGCATATTTTAATACTAGGACGTACATGAGTTCAAATTCTGGTTGATGCTATTATGCTTTAATCTgggaaataaaattaatttaaaaaaaaaaaaaaaaaaaaaagttaaactgcaccttaaatgcatttaagttccattttgacagttttcttttctctccgttatcaagcccctgaaaTGTTCTGAGGTGAGCCGATTTTCAATAGCTGTGAGTCTGACCATGCACTTGTCACTTTCTAGTTTTCTGAGCAGGTTTAGATTTCTCCAGAACTGTCCTGAAAAGCTCTATCCCTTTAAAGACCTTGCCATGCTTTAATGTAGAAATCAGATGTTGAATACGATCACCAGTAATGATTTGCTTGGGCATTTCAGGTCGTCTACTGCTAAAAGGTGCTTCATTTTCATTActggtgttttctttttaaagaaattactgACAGGCTGTTTGCTTTAGGAATTAGAATTATTCGGAGAAATGCAATGTTGTGTATATAATCTACTATGTTAATATACAATTCAAAAGGAAAATTCTAGCCACATAGTTTGAAAGACCATAGTGAGGTACCTGTTTTCACCGTAGGGTCCGACCACATCTGTGTTTGACAAAAGCaacaataattattacatttattaatagtaAGGTTAGTATAGCACTAGCTCGAAACCCAAATAGAGATAATGAGAGAGTTCTATCCCGAAACCTCTTTAATATGCTACACAACTCCCCTCTCGAAACTGTGAGCCTGTGTCATTAATGTGGGAGTTGTAGtacttattttctttattagttTTGTTCATAAAACTAATGGATATGCCTGAATAGGTCAGACCTATTGACATTATATCTTCATGTGTCAGCACACTAATAAAGCAGACAAATGCACTGCAGTTTGAATAACGTGtctgatttaagaaaaaaaaaaaagtaagtgaaCAGATCAGCAATCTGTGATTTCTTGGCTAATTACTGGATTAATCTGCCTGACATTAAAATtatgcaaaattaaaatatcatgtTGTGATGTACAGTGAGATGGATTCCAGTGCTGAACATTAAATGGATGAAGTTGTCTACATTTCTGTGAAATCAactatttattttgtaaaaatagTGGTTCTCGTTTTTTCAAAGAGCTACAATGTCCGGGAGTCTTTATGCCACTGTTTTAAGAGTATGGTTTAAATTTGCACACAGCACAATGCACAACAGACTCAACAATGTACTATTTTATCTTAAGTTAATCTTGAGTTAAATCCTTGTAGCCAAAACAAATCCACATAATTGATAATGCAGCTGTAGCTCTAAATGCTCTGAGATAATTTGTCAACAAATTGAGGTCAATATTATGATGTTCAGACACACCCCCCCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29196 lncRNA downstream 744867 10170970 ~ 10171175 (-) True G24623
TU29193 lncRNA downstream 747573 10168211 ~ 10168469 (-) True G24620
TU29190 lncRNA downstream 754801 10161032 ~ 10161241 (-) True G24617
TU29184 lncRNA downstream 763877 10151817 ~ 10152165 (-) True G24611
TU29143 lncRNA downstream 976999 9938256 ~ 9939043 (-) True G24572
XR_003403497.2 lncRNA upstream 32532 10966696 ~ 10984007 (-) True LOC113534445
TU29800 lncRNA upstream 87359 11021523 ~ 11021725 (-) True G25184
TU29801 lncRNA upstream 88275 11022439 ~ 11022641 (-) True G25185
XR_004579523.1 lncRNA upstream 323600 11257764 ~ 11262304 (-) True LOC117599085
TU29952 lncRNA upstream 392662 11326826 ~ 11329556 (-) True G25320
XM_026937005.2 mRNA downstream 5558 10906195 ~ 10910484 (-) True snrpb
XM_034300796.1 mRNA downstream 12097 10888412 ~ 10903945 (-) True ddx27
XM_034312332.1 mRNA downstream 31019 10874924 ~ 10885023 (-) True znfx1
XM_026924429.2 mRNA downstream 230156 10584433 ~ 10685886 (-) False LOC113532783
XM_034299701.1 mRNA downstream 254677 10554433 ~ 10661365 (-) False LOC113532783
XM_026923859.2 mRNA upstream 52144 10986308 ~ 11011812 (-) True cbfa2t2
XM_026923861.2 mRNA upstream 54558 10988722 ~ 11000400 (-) False cbfa2t2
XM_034297881.1 mRNA upstream 54558 10988722 ~ 11000400 (-) False cbfa2t2
XM_026915010.2 mRNA upstream 135721 11069885 ~ 11169050 (-) False tox2
XM_026915003.2 mRNA upstream 135721 11069885 ~ 11169050 (-) False tox2
TU29342 other downstream 425747 10489293 ~ 10490295 (-) True G24760
TU29080 other downstream 1047764 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 1197072 9715527 ~ 9718970 (-) False tnnt2b
TU28673 other downstream 1474232 9435563 ~ 9441810 (-) False tusc2a
TU28036 other downstream 2431928 8481051 ~ 8484114 (-) False tcta
XR_003403751.2 other upstream 2304540 13238704 ~ 13238806 (-) True LOC113537313
TU31648 other upstream 2564441 13498605 ~ 13499984 (-) False slc5a8l
TU31814 other upstream 2698098 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 2939550 13873714 ~ 13907189 (-) False lhfpl4a
TU31994 other upstream 3116237 14050401 ~ 14058445 (-) True G27107

Expression Profile