RNA id: TU31647


Basic Information

Item Value
RNA id TU31647
length 1248
lncRNA type sense_over
GC content 0.37
exon number 5
gene id slc5a8l
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13493512 ~ 13502170 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAATGAGTGCGTCATCAAAGCAGCAGGGGGAGGGGCTGGCGCTCACATatgttgcagtgcattatgggatttgtAGTATGAGTGGTGTGATTGCGATTTACCGGCGAGCCATTAATAATAGACGTATGAAATTATCTCGGGGGCCGGATATAATCGTATCACGGGCCGGATGGTGGCCTGACTGGGTTAATAACTGGCCTGATTATAACCCTGTGGGTGGGCATTGGCGCTCAGGTGTACCCTCCTTTACCGAATAAGACCAAACCACTTGCCCTCAGTGTGGCAGGATGTGATTCTGGAAACACAAACATAACCACTACAGTGGCAGCATGGACAAGTACAGCCCTACCGACCACAGAGTCAAGCATTGTGAGACCAGCTCTTGCAGATTCCTGGTACTCTTTGTCCTACCTGTACTTCTGCCCTCTGGCCCTGCTGGTGACGATGATCACTGGGCTAATCGTCAGTGCCATCTCAGGTGGCTGTAAACAAGAGAAGATAAACCCAGAGATGTTTGTTAGGAAGGAAGACCTCATCTGCTTTGGCTGCAGTAGAACGTGCACTAAGAACCCTGCATCAGACTTGATTGAGAAGGTAGGGCCAGAACATCTGTATGGCTTGGACAATCCTCAGTTCACTGACAGTGAACTGAAACTGAAGGACAGTGACAAGAGCACCAAGTTATAAACTATTTTTCTGTCACTACATtagaatgaatttattcatgaTACTGTAAAACTTACAGTACTGGCTACAGGTTGGTTGAAATAATTTTGTCCTGAGACATAGAACCACTGTAACTAGGACAgtggtcatttttttaaaaagataatttaatcaaatacttaattataattttaaacagCTTTCTTTGTAATGGGATGTGTATTCTTGGGTAACTTTTTATAGTTGAAATCTCAGGGCAgcctatttattattattattttttatcttgaATTAAGTATTATTTGTAATGCAATATTCAGAGACTGATTGTAGATGGCATGGTGGGGCAATTGTTAGAACTGCccgttaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagacaccctgtgatggactggcgtcttATTCAGGGTGTTTTCCTGCCTCATGCTCAGCACACCtgtgataggctccagatccacttgACCAGGACAATGTACTTATAgcagaggaatgaatgaataaagtgattgtgtttttgtaattatacaattaaaacaaaaatatacaagtaAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31421 lncRNA downstream 317353 13175077 ~ 13176159 (-) True G26613
TU31418 lncRNA downstream 323850 13169253 ~ 13169662 (-) True G26610
TU31379 lncRNA downstream 387426 13104457 ~ 13106086 (-) True G26585
TU31363 lncRNA downstream 422689 13070595 ~ 13070823 (-) True G26570
TU31148 lncRNA downstream 692279 12801007 ~ 12801233 (-) True G26387
TU31618 lncRNA upstream 14515 13510376 ~ 13568936 (-) True G26788
TU31828 lncRNA upstream 145303 13641164 ~ 13646894 (-) False fkbp11
TU31831 lncRNA upstream 151586 13647447 ~ 13694820 (-) False G26970
TU31830 lncRNA upstream 159611 13655472 ~ 13694820 (-) True G26970
TU31846 lncRNA upstream 188262 13684123 ~ 13685782 (-) True G26985
XM_026926108.2 mRNA downstream 253 13490194 ~ 13493259 (-) False si:ch211-105j21.9
XM_026926098.2 mRNA downstream 253 13490194 ~ 13493259 (-) True si:ch211-105j21.9
XM_026926279.2 mRNA downstream 241601 13234936 ~ 13251911 (-) True ppm1j
XM_026922711.2 mRNA downstream 261772 13214941 ~ 13231740 (-) True rhoca
XM_026927218.2 mRNA downstream 303963 13177828 ~ 13189549 (-) True capza1a
XM_026914240.2 mRNA upstream 20319 13516180 ~ 13530635 (-) True tspan2a
XM_034298028.1 mRNA upstream 37120 13532981 ~ 13544134 (-) False ngfb
XM_034298017.1 mRNA upstream 37120 13532981 ~ 13544134 (-) False ngfb
XM_026925656.2 mRNA upstream 37120 13532981 ~ 13544134 (-) False ngfb
XM_034298022.1 mRNA upstream 37120 13532981 ~ 13544134 (-) False ngfb
XR_003403751.2 other downstream 254706 13238704 ~ 13238806 (-) True LOC113537313
TU29342 other downstream 3003217 10489293 ~ 10490295 (-) True G24760
TU29080 other downstream 3625234 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 3774542 9715527 ~ 9718970 (-) False tnnt2b
TU28673 other downstream 4051702 9435563 ~ 9441810 (-) False tusc2a
TU31648 other upstream 2744 13498605 ~ 13499984 (-) False slc5a8l
TU31814 other upstream 136401 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 377853 13873714 ~ 13907189 (-) False lhfpl4a
TU31994 other upstream 554540 14050401 ~ 14058445 (-) True G27107
trnae-cuc_5 other upstream 896419 14392280 ~ 14392351 (-) True trnae-cuc_5

Expression Profile