RNA id: XM_026921607.2


Basic Information

Item Value
RNA id XM_026921607.2
length 2614
RNA type mRNA
GC content 0.45
exon number 15
gene id slc5a8l
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13493512 ~ 13502170 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTGAACAAGGATTTCTTTGCTTTACTGATGACTTTATTGGATTTTGTGTAAACTGAAGATGTCTATTAAAAGCTAACTTTACAGCAGACCAACAATAGGCACCTGGTAAATCTGTAACGTATGACACTGAGATTGTGTATAGAAGGCTATAAAGGGCGGTTTAAATTTTTGACAGGAGACTGAACGCGTGCCTTTGTTGTGTCATTACGAACCATGGCTGGTGGTGGAGGTCCAACGGCTACATTCTCAGTCTGGGACTATGTGGTGTTTGCCGGGATTATTTTGGTAGCTGCTGGCATTGGGCTCTTTCAAGCTTTCCGAAGCCGTAAGGATAACAGCAGTATTGAGTTCTTGCTGGGTGGCCGCCAGATGACAGCAGTGCCAGTCGCCATGTCCCTCACGGCCAGTTTCATGTCTGGGATCACGGTGATTGGCACTCCTGCGGAAGCCTACAAATATGGCACGGCATTTTGGCTCTTTGCCTTCTCTTACACCATAATGTCTGCCATCACTGCAGAGATCTTTGTGCCTCTGTTCTATCGCCTGGGCATCACCAGTACATACGAGtactTGGAGCTGCGCTTCAATAAGGTTATTCGAGTGATCGGAACATCCATGTACATAGTCCAGACAGCTTTGTACACAGGCATGGTTATCTATGCTCCAGCGCTTGCCCTCAATCAGATTACTGGCCTGGATCTTTGGGGAGTGCTGGTGGCCACAGGAGTCGTCTGCATCATCTACTGCACTCTGGGAGGCCTGAAGGCAGTGATATGGACAGATGTGTTCCAGATGGTCGTTATGCTGGCCGGGTTTGTAGCAGTCATCGCTCGTGGGGCCGTGCTTCAGGGAGGCCTGGGAAAAATCTGGGAAGATAACTACAATGGTGGACGCTTAGACACGTTTAGTTTTGATCCAGATCCTCTGAAACGGCACAGTTTTTGGACAATAGTTGTTGGGGGTAGTTTGATGTGGGTGTCAATGTATGCCATTAACCAGTCACAGGTGCAGCGCTATATCTCCTGTAAAACAATGACCCATGCCAAAATGTCTCTGTATGTAAATATGGTGGGATTGTGGGTTACTGTGAGTCTGGCAATATTATCTGGCCTCACCATGTACTCTATCTATAAAGACTGCGATCCTCTTACTAACAAAGATGTTGGTTCTTCCGACCAGctcctACCATATCTAGTGATGGACATTCTAGCAGAATTTCCAGGCGTTCCTGGCTTGTTTGTAGCAGCTGCATACAGTGGAACTTTAAGTACGGTATCATCCAGCATTAACGCTCTGGTGGCCGTCACAGTGGAAGACTTTGTGAAACCTATGTGGCCCAATCTGAGTGAAAAGCAGCTGTCGTGGATTAACATGAGCATGAgtgttttttttggggCTTTGTGCATTGCTATGGCAGCAGTTGCCTCTTTGATGGGAAGTATATTGCAGGCTGCCTTGTCTGTATTTGGTATGATCAGTGGACCTCTGTTGGGGCTTTTCCTTCTGGGCATGTTCTTCCGTTGTGCTAACCCCATTGGTGGCCTGACTGGGTTAATAACTGGCCTGATTATAACCCTGTGGGTGGGCATTGGCGCTCAGGTGTACCCTCCTTTACCGAATAAGACCAAACCACTTGCCCTCAGTGTGGCAGGATGTGATTCTGGAAACACAAACATAACCACTACAGTGGCAGCATGGACAAGTACAGCCCTACCGACCACAGAGTCAAGCATTGTGAGACCAGCTCTTGCAGATTCCTGGTACTCTTTGTCCTACCTGTACTTCTGCCCTCTGGCCCTGCTGGTGACGATGATCACTGGGCTAATCGTCAGTGCCATCTCAGGTGGCTGTAAACAAGAGAAGATAAACCCAGAGATGTTTGTTAGGAAGGAAGACCTCATCTGCTTTGGCTGCAGTAGAACGTGCACTAAGAACCCTGCATCAGACTTGATTGAGAAGGTAGGGCCAGAACATCTGTATGGCTTGGACAATCCTCAGTTCACTGACAGTGAACTGAAACTGAAGGACAGTGACAAGAGCACCAAGTTATAAACTATTTTTCTGTCACTACATtagaatgaatttattcatgaTACTGTAAAACTTACAGTACTGGCTACAGGTTGGTTGAAATAATTTTGTCCTGAGACATAGAACCACTGTAACTAGGACAgtggtcatttttttaaaaagataatttaatcaaatacttaattataattttaaacagCTTTCTTTGTAATGGGATGTGTATTCTTGGGTAACTTTTTATAGTTGAAATCTCAGGGCAgcctatttattattattattttttatcttgaATTAAGTATTATTTGTAATGCAATATTCAGAGACTGATTGTAGATGGCATGGTGGGGCAATTGTTAGAACTGCccgttaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagacaccctgtgatggactggcgtcttATTCAGGGTGTTTTCCTGCCTCATGCTCAGCACACCtgtgataggctccagatccacttgACCAGGACAATGTACTTATAgcagaggaatgaatgaataaagtgattgtgtttttgtaattatacaattaaaacaaaaatatacaagtaAA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function

KEGG:

id description
K14388 SLC5A8_12, SMCT; solute carrier family 5 (sodium-coupled monocarboxylate transporter), member 8/12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31421 lncRNA downstream 317353 13175077 ~ 13176159 (-) True G26613
TU31418 lncRNA downstream 323850 13169253 ~ 13169662 (-) True G26610
TU31379 lncRNA downstream 387426 13104457 ~ 13106086 (-) True G26585
TU31363 lncRNA downstream 422689 13070595 ~ 13070823 (-) True G26570
TU31148 lncRNA downstream 692279 12801007 ~ 12801233 (-) True G26387
TU31618 lncRNA upstream 8206 13510376 ~ 13568936 (-) True G26788
TU31828 lncRNA upstream 138994 13641164 ~ 13646894 (-) False fkbp11
TU31831 lncRNA upstream 145277 13647447 ~ 13694820 (-) False G26970
TU31830 lncRNA upstream 153302 13655472 ~ 13694820 (-) True G26970
TU31846 lncRNA upstream 181953 13684123 ~ 13685782 (-) True G26985
XM_026926108.2 mRNA downstream 253 13490194 ~ 13493259 (-) False si:ch211-105j21.9
XM_026926098.2 mRNA downstream 253 13490194 ~ 13493259 (-) True si:ch211-105j21.9
XM_026926279.2 mRNA downstream 241601 13234936 ~ 13251911 (-) True ppm1j
XM_026922711.2 mRNA downstream 261772 13214941 ~ 13231740 (-) True rhoca
XM_026927218.2 mRNA downstream 303963 13177828 ~ 13189549 (-) True capza1a
XM_026914240.2 mRNA upstream 14010 13516180 ~ 13530635 (-) True tspan2a
XM_034298028.1 mRNA upstream 30811 13532981 ~ 13544134 (-) False ngfb
XM_034298017.1 mRNA upstream 30811 13532981 ~ 13544134 (-) False ngfb
XM_026925656.2 mRNA upstream 30811 13532981 ~ 13544134 (-) False ngfb
XM_034298022.1 mRNA upstream 30811 13532981 ~ 13544134 (-) False ngfb
XR_003403751.2 other downstream 254706 13238704 ~ 13238806 (-) True LOC113537313
TU29342 other downstream 3003217 10489293 ~ 10490295 (-) True G24760
TU29080 other downstream 3625234 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 3774542 9715527 ~ 9718970 (-) False tnnt2b
TU28673 other downstream 4051702 9435563 ~ 9441810 (-) False tusc2a
TU31814 other upstream 130092 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 371544 13873714 ~ 13907189 (-) False lhfpl4a
TU31994 other upstream 548231 14050401 ~ 14058445 (-) True G27107
trnae-cuc_5 other upstream 890110 14392280 ~ 14392351 (-) True trnae-cuc_5
XR_003403256.2 other upstream 1370778 14872948 ~ 14875990 (-) False pxmp4

Expression Profile