RNA id: XM_026922243.2


Basic Information

Item Value
RNA id XM_026922243.2
length 536
RNA type mRNA
GC content 0.48
exon number 4
gene id rps26l
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13632262 ~ 13634744 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTTGGTTTTTATCATTGTTACAtttctgattataaaatacCCAGAATCTTTTTTCTTTGAGCGGAGGAAGTACGTTATTACAGTTCCGGTCCGCCTCTTCCGGTCCTCTTTCCTGCCTCCTTTCCAAGATGactAAGAAGAGAAGGAATAACGGACGCGCCAAGAAGGGCCGTGGGCACGTTCAGCCTATCCGCTGCACTAACTGTGCTCGGTGTGTACCCAAAGACAAGGCCATCAAGAAGTTTGTGATAAGGAACATCGTTGAGGCTGCAGCCGTCAGGGACATCTCGGAGGCTAGTGTATTTGACTCCTATGTGCTGCCCAAGCTCTATGTGAAACTGCATTATTGCGTGAGCTGTGCCATCCACAGTAAGGTGGTGAGGAACCGTTCTCGGGAGGCCCGTAAAGACCGGACACCACCTCCACGCTTTAGGCCTAGTGGTGCTGCCCCCAGAGCTCCTCCTAAGCCTATGTGAAGAATGAGTCAAAAACTGTACATTTATgtgcaaagaaataaaatgatttgatgAGAAAA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02976 RP-S26e, RPS26; small subunit ribosomal protein S26e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31618 lncRNA downstream 63366 13510376 ~ 13568936 (-) True G26788
TU31647 lncRNA downstream 136441 13493512 ~ 13495861 (-) False slc5a8l
TU31421 lncRNA downstream 456143 13175077 ~ 13176159 (-) True G26613
TU31418 lncRNA downstream 462640 13169253 ~ 13169662 (-) True G26610
TU31379 lncRNA downstream 526216 13104457 ~ 13106086 (-) True G26585
TU31828 lncRNA upstream 6420 13641164 ~ 13646894 (-) False fkbp11
TU31831 lncRNA upstream 12703 13647447 ~ 13694820 (-) False G26970
TU31830 lncRNA upstream 20728 13655472 ~ 13694820 (-) True G26970
TU31846 lncRNA upstream 49379 13684123 ~ 13685782 (-) True G26985
TU31888 lncRNA upstream 154049 13788793 ~ 13791366 (-) True G27016
XM_026922234.2 mRNA downstream 2756 13626968 ~ 13629546 (-) True rplp2
XM_034298028.1 mRNA downstream 88168 13532981 ~ 13544134 (-) False ngfb
XM_026917278.2 mRNA upstream 5637 13640381 ~ 13647177 (-) True fkbp11
XM_026917285.2 mRNA upstream 5637 13640381 ~ 13646612 (-) False fkbp11
XM_026918474.2 mRNA upstream 72710 13707454 ~ 13727074 (-) True acvr1bb
XM_026926234.2 mRNA upstream 103799 13738543 ~ 13742560 (-) False LOC113533843
XM_026926224.2 mRNA upstream 103799 13738543 ~ 13742554 (-) False LOC113533843
TU31648 other downstream 132318 13498605 ~ 13499984 (-) False slc5a8l
XR_003403751.2 other downstream 393496 13238704 ~ 13238806 (-) True LOC113537313
TU29342 other downstream 3142007 10489293 ~ 10490295 (-) True G24760
TU29080 other downstream 3764024 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 3913332 9715527 ~ 9718970 (-) False tnnt2b
XR_004579719.1 other upstream 238970 13873714 ~ 13907189 (-) False lhfpl4a
TU31994 other upstream 415657 14050401 ~ 14058445 (-) True G27107
trnae-cuc_5 other upstream 757536 14392280 ~ 14392351 (-) True trnae-cuc_5
XR_003403256.2 other upstream 1238204 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other upstream 1238205 14872949 ~ 14875990 (-) False pxmp4

Expression Profile