RNA id: TU31828


Basic Information

Item Value
RNA id TU31828
length 775
lncRNA type sense_over
GC content 0.50
exon number 4
gene id fkbp11
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13640381 ~ 13647177 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGGGGCTCCAGATAGCCAGGTGTTAGGACAGAGATCGCCGCTGCTGTGCTTTTATCATTCCGCTAGAATAACACATCAGCCTTAACTGGCGTCGAGCCGCACGCTATTTAagttgtgtgtgagagtgtgtgtgtgtgtgtgtgtgtgtgagagagagattcatcGTCGGTGCAAAGCCGTCGCCTTTTATTCACGACGCGTCCTGCAGGGAggaacatttgttttttttttcacggaAGTTAAACAGCTTCCCTCGTGTTATCAGGCGcttgtgtttgatgtgaagaGGTACAATGTTATTGAGGAGTggtgctgttgttgctgtagtGTTGCTCGCCGGCTTGGTCTTGGCTGCAGCAGATGACAGTGAGACGGAGAAAAATGTCGCGGAGTTAGAGGTGGAAACGCTGGCAAAGCCGGAGACATGCACAGTAACAGCAGTGATGGGGGACACGCTTCATATCCATTACACGACAAAAAATCAAGGCCACCATTCCTGCACATCTAGCATATGGAAAAAGAGGATACCCTCCAACTATCCCAGGTGACTCCGCTCTGGAGTTCGAGGTGGAGGTGATCTCCCTGGTGCAGCAGACGCCATGGCAGAAGCTGGTGAATGATGTCTTTCCTCTTGTGTGCCTGGCACTAGTTCCCACTTTACTGGGACTGGTGGGTCTCTACCTCTACAAGAAGGCCAACGCACAACCTCAAGGCAAGAAGAAGAGCAAGGACAAGAAGagcaagaagaaataaaaaggacATGGAAGGAAcaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31618 lncRNA downstream 72228 13510376 ~ 13568936 (-) True G26788
TU31647 lncRNA downstream 145303 13493512 ~ 13495861 (-) False slc5a8l
TU31421 lncRNA downstream 465005 13175077 ~ 13176159 (-) True G26613
TU31418 lncRNA downstream 471502 13169253 ~ 13169662 (-) True G26610
TU31379 lncRNA downstream 535078 13104457 ~ 13106086 (-) True G26585
TU31831 lncRNA upstream 553 13647447 ~ 13694820 (-) False G26970
TU31830 lncRNA upstream 8578 13655472 ~ 13694820 (-) True G26970
TU31846 lncRNA upstream 37229 13684123 ~ 13685782 (-) True G26985
TU31888 lncRNA upstream 141899 13788793 ~ 13791366 (-) True G27016
TU31923 lncRNA upstream 188936 13835830 ~ 13836349 (-) False G27043
XM_026922243.2 mRNA downstream 6420 13632302 ~ 13634744 (-) True rps26l
XM_026922234.2 mRNA downstream 11618 13626968 ~ 13629546 (-) True rplp2
XM_034298028.1 mRNA downstream 97030 13532981 ~ 13544134 (-) False ngfb
XM_034298017.1 mRNA downstream 97030 13532981 ~ 13544134 (-) False ngfb
XM_026925656.2 mRNA downstream 97030 13532981 ~ 13544134 (-) False ngfb
XM_026918474.2 mRNA upstream 60560 13707454 ~ 13727074 (-) True acvr1bb
XM_026926234.2 mRNA upstream 91649 13738543 ~ 13742560 (-) False LOC113533843
XM_026926224.2 mRNA upstream 91649 13738543 ~ 13742554 (-) False LOC113533843
XM_034298377.1 mRNA upstream 91649 13738543 ~ 13742552 (-) False LOC113533843
XM_034298386.1 mRNA upstream 91649 13738543 ~ 13742326 (-) False LOC113533843
TU31814 other downstream 6512 13632262 ~ 13634652 (-) False rps26l
TU31648 other downstream 141180 13498605 ~ 13499984 (-) False slc5a8l
XR_003403751.2 other downstream 402358 13238704 ~ 13238806 (-) True LOC113537313
TU29342 other downstream 3150869 10489293 ~ 10490295 (-) True G24760
TU29080 other downstream 3772886 9863367 ~ 9868278 (-) False G24516
XR_004579719.1 other upstream 226820 13873714 ~ 13907189 (-) False lhfpl4a
TU31994 other upstream 403507 14050401 ~ 14058445 (-) True G27107
trnae-cuc_5 other upstream 745386 14392280 ~ 14392351 (-) True trnae-cuc_5
XR_003403256.2 other upstream 1226054 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other upstream 1226055 14872949 ~ 14875990 (-) False pxmp4

Expression Profile