RNA id: TU31924


Basic Information

Item Value
RNA id TU31924
length 653
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G27043
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13835830 ~ 13836482 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTAAACGGCCGTTGGTTTGAAATCCGTCAATCTCTGTGcgcaaacaaacacagagatcTGATTGGACAAGAAAAGTTAAACGTGTTCGTTGAGCAAGACGGGGCAGGACTTCGCTTTTGGGAGGGGTGGACAGCGTAGTCAGCTTCTGCACCGCTCGGTGAGAAGGTGGACGGAGTGAATAACGCAGACGGCGAGAAAAGACCTAGTAGCTAAACGGATATTCGAAAGAAGTAAATGAGGATATTATGGGAACAGTGGTCACGTTATTAAATACACACGGCGTGGAATTTTCAATTCTTTCATAAAGggattattcttttttcttgtaaACAAAATCTATTCAGCGCTAAAGGGAATACCCTCAGCTTGGGTTAGCCATATAGCAGCTGTTTGTCCATAGCACGGGGTCTCCGGGGCCCCATACCAGGGACTACGACATTAGAGGTAGGGTCAGCCCCACCTTAACCCCGCTATGAATGGAACATGAAGTGTCGGTCTTATGGGACCTGGCATGGGATTGGACAGGGATATCGACTTGTCTATACATTTCCTGACTGTGTTCACTTCATACAAGGGCAACATTTCCGTTCAGACGGCGCAGGTTTTGGTTCTTTCACAAAAGGGATGGGTTTGAATTCATACACCACGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31888 lncRNA downstream 44464 13788793 ~ 13791366 (-) True G27016
TU31831 lncRNA downstream 141010 13647447 ~ 13694820 (-) False G26970
TU31830 lncRNA downstream 141010 13655472 ~ 13694820 (-) True G26970
TU31846 lncRNA downstream 150048 13684123 ~ 13685782 (-) True G26985
TU31828 lncRNA downstream 188936 13641164 ~ 13646894 (-) False fkbp11
TU31990 lncRNA upstream 190820 14027302 ~ 14028884 (-) True G27105
XR_004580178.1 lncRNA upstream 227474 14063956 ~ 14099689 (-) True LOC117599875
TU32060 lncRNA upstream 320456 14156938 ~ 14158099 (-) True G27168
TU32061 lncRNA upstream 336190 14172672 ~ 14172921 (-) True G27169
XR_004577242.1 lncRNA upstream 402313 14238795 ~ 14251264 (-) True LOC117596067
XM_026926234.2 mRNA downstream 93270 13738543 ~ 13742560 (-) False LOC113533843
XM_026926224.2 mRNA downstream 93276 13738543 ~ 13742554 (-) False LOC113533843
XM_034298377.1 mRNA downstream 93278 13738543 ~ 13742552 (-) False LOC113533843
XM_034298386.1 mRNA downstream 93504 13738543 ~ 13742326 (-) False LOC113533843
XM_034298371.1 mRNA downstream 93572 13738543 ~ 13742258 (-) True LOC113533843
XM_034311817.1 mRNA upstream 28462 13864944 ~ 13907189 (-) False lhfpl4a
XM_026912752.2 mRNA upstream 37232 13873714 ~ 13907189 (-) False lhfpl4a
XM_026912744.2 mRNA upstream 37232 13873714 ~ 13907189 (-) False lhfpl4a
XM_026912736.2 mRNA upstream 37232 13873714 ~ 13907189 (-) True lhfpl4a
XM_034314008.1 mRNA upstream 194282 14030764 ~ 14044325 (-) True cfap100
TU31814 other downstream 201178 13632262 ~ 13634652 (-) False rps26l
TU31648 other downstream 335846 13498605 ~ 13499984 (-) False slc5a8l
XR_003403751.2 other downstream 597024 13238704 ~ 13238806 (-) True LOC113537313
TU29342 other downstream 3345535 10489293 ~ 10490295 (-) True G24760
TU29080 other downstream 3967552 9863367 ~ 9868278 (-) False G24516
XR_004579719.1 other upstream 37232 13873714 ~ 13907189 (-) False lhfpl4a
TU31994 other upstream 213919 14050401 ~ 14058445 (-) True G27107
trnae-cuc_5 other upstream 555798 14392280 ~ 14392351 (-) True trnae-cuc_5
XR_003403256.2 other upstream 1036466 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other upstream 1036467 14872949 ~ 14875990 (-) False pxmp4

Expression Profile