RNA id: TU32819


Basic Information

Item Value
RNA id TU32819
length 1358
RNA type TUCP
GC content 0.43
exon number 2
gene id G27843
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15297309 ~ 15299019 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTGTGCGCCAGCTGCGAGAGCTGGCATCTTTAGCAGCATTTATCAGCTCTGAGATCCCATCTTCTGTTATCTCTTCCACTGCTTTCAGCACATCATCAGCGTGTCCTAGATAGATACTAGAAGAAAATAGGAAATAGACAGAAAGGTCAAAAATAGGTCAAGAGTTCCACCCAGGCATGACTGAAATATCAGCACAATAACATGGGAGGAACCTGAGGAGACTCTGGAGTGCATCGTTGTGTTTGTTCCCACGTTCCCTCCCTCCACTTCCTGTCACCCACTCCTGACACAGGAAATGCTTAGCCAGGGACGCTGGAGGAAAGCATTACATACTGTTAGCCAAAAGCTACAAGGAAGTAAGCTTATAATTCAAATAGACGtgttaaagtaaatttaaagtGTTTCATAAAGGAGTGTGCTGAAGCAGTGTGTATAGGTTGACAGACCGGTGTGTTCCCTGTAGAAGCTCTGGCTGGATCTTCCATACTGACTGAGCACAATGAGCAGCTGCGTCAGGATCAGAGCCGTGCTTAAGCTGGGCACAGTGCTCCGGAAATTCAGCAGCTGCTCCAGGGTTTGGTCTGCATCTTTCTCCTTCAGTCGGCTGGCAAGCACACTGAGAGCACTCTTTAACAGCGGCCTCTGTTCCAGCTGGGAGAAGCCAGACCTGAAAACATATCACAacctcacacactgcatcagcTCTAACTTCACACAACCAGATCTTAACACCAGAACCTGTGTGAGatcaacaccaacaccaacaacaaaaaaaactcttggGCTTGTTTTCCAGAAGCACATAAAGTCTCCGAGTGCTTTCTAATGCTAATTAGAgaaaaattaattgaattaaaatctgATCTTCAGTTGCATTTTGTAGTGAAATCCTGAATTGACCTTtgtagtttaaacttctttcattgtcctggtttcactttggttaatggtttcctgtTACCCACAGTGCAGTTTGACTACGTGCTGATAGTAGTGCCAGTTAGAATTAGCTCTCgtttcatctctacctaaaaatgagtgatgcagcagcactttagtcctttagcctgtccagctctctctcctcctcatctgtacactctgctcaaacagataatgttccaaagcttcaactttcatgctaataccatcGTCAACATCATCAGTCTTGATATCTGGTAGATCACTAGCTAGCCGATTCGAGTATCTGCTGTAACTGcattgtatagctgcattgcattgtggaactttgagtccagtaTTTGCTGTCTCTGCTACTTTTTCTTTGGATTTCTCATttactttttcttgttttttggaTTTACTTTTTCTTTGGATTTTCTTCTATTAAATGGC

Function

GO:

id name namespace
GO:0007259 receptor signaling pathway via JAK-STAT biological_process
GO:0097696 receptor signaling pathway via STAT biological_process

KEGG:

id description
ko04668 TNF signaling pathway
ko04380 Osteoclast differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32777 lncRNA downstream 50956 15244315 ~ 15246353 (-) True G27801
TU32670 lncRNA downstream 146260 15150812 ~ 15151049 (-) True G27706
TU32669 lncRNA downstream 151154 15144705 ~ 15146155 (-) True G27705
TU32663 lncRNA downstream 167049 15130003 ~ 15130260 (-) True G27699
TU32615 lncRNA downstream 232098 15064885 ~ 15065211 (-) True G27652
TU32884 lncRNA upstream 83895 15382914 ~ 15384090 (-) True G27904
TU32925 lncRNA upstream 173322 15472341 ~ 15472547 (-) True G27932
TU32928 lncRNA upstream 178771 15477790 ~ 15478008 (-) True G27935
TU32946 lncRNA upstream 204813 15503832 ~ 15504043 (-) True G27953
TU33196 lncRNA upstream 316006 15615025 ~ 15616748 (-) True G28173
XM_026917581.2 mRNA downstream 18596 15276905 ~ 15278713 (-) True gpx1b
XM_026929254.2 mRNA downstream 257706 15033446 ~ 15039603 (-) True nprl2
XM_026929243.2 mRNA downstream 264747 15025127 ~ 15032562 (-) True zmynd10
XM_034313981.1 mRNA downstream 264808 15025127 ~ 15032501 (-) False zmynd10
XM_034313979.1 mRNA downstream 265664 15025127 ~ 15031645 (-) False zmynd10
XM_034314036.1 mRNA upstream 163054 15462073 ~ 15495209 (-) True oxtr
XM_026919181.2 mRNA upstream 163054 15462073 ~ 15470172 (-) False oxtr
XM_026919171.2 mRNA upstream 163054 15462073 ~ 15470159 (-) False oxtr
XM_034314047.1 mRNA upstream 206625 15505644 ~ 15568428 (-) False rad18
XM_034314051.1 mRNA upstream 206625 15505644 ~ 15568428 (-) False rad18
XR_003403256.2 other downstream 421319 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other downstream 421319 14872949 ~ 14875990 (-) False pxmp4
trnae-cuc_5 other downstream 904958 14392280 ~ 14392351 (-) True trnae-cuc_5
TU31994 other downstream 1238864 14050401 ~ 14058445 (-) True G27107
XR_004579719.1 other downstream 1390120 13873714 ~ 13907189 (-) False lhfpl4a
TU32916 other upstream 157616 15456635 ~ 15461001 (-) True G27925
TU32920 other upstream 162931 15461950 ~ 15469229 (-) False oxtr
TU34409 other upstream 1973936 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 2214693 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 2650138 17949157 ~ 17949718 (-) True G29263

Expression Profile