RNA id: TU32916


Basic Information

Item Value
RNA id TU32916
length 1282
RNA type TUCP
GC content 0.44
exon number 2
gene id G27925
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15456635 ~ 15461001 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGATTTTCtaagatatatttattttgtgtacGGTCCAAATCACACATATGTGATAAATCAAGACATCTAGATTTTATCTAATTTATAAAGGCAAGAACATGAGTATCACTGTATCATTCCACAAGAAATTTCATCttcttaaatttcttttttgacATTACAGGAATACAGTAAAGTAATAAACTTGTACccaataataatgtttaattagcaCACAGAGAGAAGGCCTTATCACATAAAAGCATAAGACTTGTCAtctgctgtcaactctcaaatACTCTTCAACATAAATATTTCTCTGAACAGGTGAGTAAGTCAAGGTGAACTGCATAAATACCTCTGATCACACCTCAAGAAATGTCTAGGCAGCAGCATTCAGTCACCATTACGTACATCTACCTACATCTACCTAGTTTTCATTCATGTAAAGACAGTGGGGCTGAGGCCTAAGCCCATCAAGGTCTGACctcttttataaaaataaaacaaaaccaaaaggaCACCAATTTCCCTGGCAGACATTGTGAACATTGTTTTTGTGACCTCTACACCTCCTTGCGAAGCGCCACTCGTATGCTGCTGAATACTTTCCCCAGTGCCTCGAAGAAGGGGTCGCAGAATGTATGGATGCAGAGGGAGTAGATTCGACTCAGGCACTGGGTTTCAATCAGGTAGCTCTTGATGCAGGGCATGACGGCCCAGATGTGGCAAAAAGAGATGCAGGCAAAGCAGAATCCCCACAGCAGCGCAACTGGGATACCAAAGATGGCAGACAGTATGCGGTAGCACCAGTACTTGGAGATGGTGAAGGTGGTGTAGCTGGCTTTCCACACTCCATCCATACTGTGTGTGCCATCAGGCTCGGCAATCACATCCTCAAAATTACCTTCACGACATCCTCATTAATTTGCTTGGGGTCCCTGTTGATCAAGTCAATCTCTTTGGTATGACTGTCCTTTAGGATCTTCTCCTCACTGATGTTGTACTGGTTTGCCATGGCGGTAGCCTCGGGCCCTGCACTGGCCGGAATGGGAGCAGAGTTGAGCCAGGGAAGGGTGCGAATAAAGGGGATTTGATGCCCTTGCAAGCGAGCAGCTAaacagaaagagtgtgtgaacagTTGCCTCTGAACCTCACTCGCTGATCTGAGGACACGCCTGGAATGTTAGAGGACAGCTGCACTAGACTAGCCTCTACTCTATAATGGGTTCCTGTCTTTCACTGCCTCCCTCActcgctttctctctcaatTCCCTTACTTTACCTTGTGCCACACATCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32884 lncRNA downstream 72545 15382914 ~ 15384090 (-) True G27904
TU32777 lncRNA downstream 210282 15244315 ~ 15246353 (-) True G27801
TU32670 lncRNA downstream 305586 15150812 ~ 15151049 (-) True G27706
TU32669 lncRNA downstream 310480 15144705 ~ 15146155 (-) True G27705
TU32663 lncRNA downstream 326375 15130003 ~ 15130260 (-) True G27699
TU32925 lncRNA upstream 11340 15472341 ~ 15472547 (-) True G27932
TU32928 lncRNA upstream 16789 15477790 ~ 15478008 (-) True G27935
TU32946 lncRNA upstream 42831 15503832 ~ 15504043 (-) True G27953
TU33196 lncRNA upstream 154024 15615025 ~ 15616748 (-) True G28173
TU33208 lncRNA upstream 220569 15681570 ~ 15682044 (-) True G28182
XM_026917581.2 mRNA downstream 177922 15276905 ~ 15278713 (-) True gpx1b
XM_026929254.2 mRNA downstream 417032 15033446 ~ 15039603 (-) True nprl2
XM_026929243.2 mRNA downstream 424073 15025127 ~ 15032562 (-) True zmynd10
XM_034314036.1 mRNA upstream 1072 15462073 ~ 15495209 (-) True oxtr
XM_026919181.2 mRNA upstream 1072 15462073 ~ 15470172 (-) False oxtr
XM_026919171.2 mRNA upstream 1072 15462073 ~ 15470159 (-) False oxtr
XM_034314047.1 mRNA upstream 44643 15505644 ~ 15568428 (-) False rad18
XM_034314051.1 mRNA upstream 44643 15505644 ~ 15568428 (-) False rad18
TU32819 other downstream 157616 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 580645 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other downstream 580645 14872949 ~ 14875990 (-) False pxmp4
trnae-cuc_5 other downstream 1064284 14392280 ~ 14392351 (-) True trnae-cuc_5
TU31994 other downstream 1398190 14050401 ~ 14058445 (-) True G27107
TU32920 other upstream 949 15461950 ~ 15469229 (-) False oxtr
TU34409 other upstream 1811954 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 2052711 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 2488156 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 2609986 18070987 ~ 18072909 (-) True G29279

Expression Profile