RNA id: TU33314


Basic Information

Item Value
RNA id TU33314
length 4458
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G28256
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16035833 ~ 16045675 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACTGGGTGAGAGATTGGTGTAGTCTCTGGTTCCGAGATGAAATATGGATCAGAGACCTGTGAAATACAGGCTgttaaattcaaacaaataaatcGTGGAGAAGAATATACAtttgtaaataagtaaaaagtGATCAAATTAATCGTAAACAATTTAATAGAGATATTACATGCATACCCTTGAGTCATCCTTAGTCACTTgatcatctgtttttttctggttgcTCTCATAATCATCATGTGTAAATGCACCTAGACCACTTCTTCCCTTCGCTGTACGTCTGGACCCAAACTTTCGCCTACCTTCTGGAAGCAGTTGCCCTGTGTCTTGTGTACTACTCTCATTTATTCGAGAGAGAGCTTGAACTTCAGACATGAGTTCAACCGATTCTTTCATGTCTTCTGTGCCTGCTGCCATGACAGTTTCCTTAACTGTCTTTGCCTCTCTTTTAGGTTCACTATTTTTAGCATTATTCTTGTCCAAATTCTCTTTTTCCTGTTCTGACCCTCCACTCTCATTGGATATTTTTTCTGCATGCTTGTTTCTAGACGTCTTGCGACTTGACCCCATTTTTCTCCTTCTTGCTGGGGAGCTCGGTTCCATGTGAATTTGAGGGTTCTGAGATGATGGTAGCTGAAGAGACACCTCAGACATTGGCTCTGAGAATTCTGATATATTAGGGTTAAGAGCTGTAGTATTTAGGGTACATTCAAAACTTTTATTTAGGTAAAACTCTATCTCACTAAGAAGGGAGCCTTCTGACTGATCAAGATTATTATGAATTTGTGGTTCATACTCTGGTACTCTTGTCTTTGTGTCACCAAAGATTGAATCAGGGTTAACTGAGTCTTCTATTGCTACTAATTTTAAATGCTCTCTATCAATGTCTCCAGCATATCTTGGGTTCATATCTTTAGTTTTTTGCAATGCTTCCTGTTTACTTTGTCCTTCTTCAAGATTCTTGCAAGTTGAACTCATTTTTTCTGCTTCAGGATCTATGATGTTTAGTGGctcagaatgtgtttgtatggaTTGATGAGATATTTTGGTAGTTAAGTTGAATGTCCTTTCTTGTGCATGATCTTTCTCTGAGGTTGATGTAATTTCTTCTGTTGTTTGTTCctggatgttttctttttcctttatcACTCTAAGACTCCTTCGAGTTGAAGCTATCTTCTTCCTTCTCCCAGAGTTTCCTGAATGTCCTGAATTCTGTGTTGCCATTTCATCTGGGGCCAGTTTTAATTCCTGTATGTGAACAACTGAGCATGTGCTTTCACATTGCTCTGGTTTTGAGTCTCTGTTTTTTGGATTCTCTAGATGTTCTTCAGACATCATGTGGTACTGTTCAGATACAACTGGCATGTCTAATCTAGCGTGTGTTTCAGGAATAAGTTCTATTGGGCCATGAGTAGGATATGCTGGTTGATTGGCACTTTCATTTTCAGTGCACTCGATACCTTGCTCATTTCTCAAGGATGGTTCAAGGATATCAAGTGACAACTCACTTATAGCATCCTGTAGCTCAGTAAGCAAGTTTGAACTAGCTGCTTGACCTACGATTTGTATTTCTTCTGTATCTTCCACATCTTTCCATTCTCCTTCCTCTCCTACAGCATGTGGTTGGTGTCTTCCATGGGGTCTCCGTGTTGATccaaatttcttctttttcttagttTGAGACATGTTCTGTGACATGTTTGAGACATGTTCTGTGAAAGCATCATCCTGTATTTTTGTGATGACTGGTTCCATTTCTTGCTCATATAAAAGTGTTGACTCGgcaacattttcctcattcaCTCCTGATCTTTCATGTTGCTCTATAATATCAGTCAGTCCTTCTGCATTGCTTACCTCGTCAGAGACCACAGTGTGAATCTGATCAACCTCATGTGATAATATGGCAAGTGACGCATCGATCCCTTCAGTCACGATTTCAACTTCTGCTTTAATGATTTCTTTTTGTTCAGTTGTCATTGGTGAATCATGGATGTCAAGTGTCACCTCACTCATAGTATTCTGTGGTTCAGTGAGCAGGTTTGAAGTAGCAGCTTGAGTTATTATTTGATGTTCAGTTTGTTCTGTATTTTCTGGATCTTTCCattctccttcctctccttcaGCATGTGGTTGGTGTCTTCCATGGGGTCTCCGTGTTGATccaaatttcttctttttcttagttTGAGACATGCTCTGTGACAAGTTTGAGACATGTTCTGTGAAAGCCTCATCCTGTATTTTTGTGATGACTGGTTCCATTTCTTGCTCATATAAAAGTGTTGACTCGATATCATTCTTCTCATTCACTCCTGATCTTTCATGTTGCTCTATAATATCAGTCAGTCCTTCTGCATTGCTTACCTCGTCAGAGACCACAGTGTGAATCTGATCAACCTCATGTGATAATATGGCAGGTGATGCATCGATCCCTTCAGTCACGATTTCAACTTCTGCTTTAATGATTTCTTTTTGTTCAGTTGTCATTGGTGAATCATGGATGTCAAGTGTCACCTCACTCATAGTATTCTGTGGTTCAGTGAGCAGGTTTGAAGTAGCAGCTTGAGTTATTATTTGATGTTCAATTTCTTCTGTAGTTTCTGGATCTTTCCattctccttcctctccttcaGCATGTGGTTGGTGTCTTCCATGGGGTCTCCGTGTTGATccaaatttcttctttttcttagtcTGAGTTTGCGTATGGATTTCTGCATTTGTCTTTTCCACAGTCTCTACGCTATTTCTATCATCTTCCTTGAAATCACCATGCTCTGTTGCAGCTGATGAATGTTCGATGGTAGTTTGAGAGGATAAAAAAATTTGAGAGGATAATTCAGAATACATATATTGTTGTGAGCACGTAGATATATCTGTAAAAGCCATATATTTCTCCTCTCCATACATATCCTCATCTatatctttttcttctctctttcctccaagAGTCCTGTGTATTGATCCCATTTTTCTTCTGTGACTGTCTTTGCTAATCAGCATACAAGCTTCCTCATGAAAAGGAGTAGTGGTGGCTTGTAGGATGTTTTCCTCTGACAATTGAGCTATTTCAGCTGCATCCATAGGTTCAGCAGAAGTTATGAGGTGATCAGTATTTATTGTATCAGTAACAAACTCAGTACATTCTGATGATTTGGACAGTCCTAATTTCAAATCTGGATAAGTATTTTGATGAAGATTTTCTAATGATATGCGTTGACCATCCTTGTCTCCCTCCCATACTGCTTCTTCATTTCGTGCTGTACTTTCAACCACTTCTGTTATGCTTTGCATGTTGAGGACCTCAGTATCAACCACATCTGATAATACTACATGTGTGGTATCCAGCCCTCTGCAAATATTTTTTACCACTACTGTTTCCTCACCCTGTCTGTCAAGTACACTACATTCTTGATTTGTGTTGACAACTTCTGTTGAGATGTGCTGACGTGTTTCATTATATTCTTGTGAAGTGTATGTGTTCTCATTTTTAACCACAGctttaatcacattttcatccattttttcttcttcaggttCCATGATATTCAATGACTCTGAGGACTGAGGATAACATGTTTCAGGAGAGAGGCTGAGTGTTCCATCCTCTGACATTGGTGTACTCTCTTCTGAGCTTTGTACCTGCATGGTTTCCTTCATTGTTTTAAAACTGTCTTTCTGGTCACCTCCTGAGATCAGTCCACTAAGACTCCTTTGAGTTGAATCTATCTGTTTTTTCTCAGAGGGGCTAAATCTAACATTTTCTGCTACTGCATCATCCTGACCCTGTCTTGAGTCCTGTATGTAAACAATTCGAGATGTGCTTTCAAACTGCTCTGCTTCAGATTCTGTATTTGTTGGATTTACTAGACATTCTTCAGACATGTTTTGCTTCTGATCAGGTAAACCTATGGCATTATACACCTGCATGTCTAATTTGACTTGTGTTTCAGGAATGATCTCCATTGGGTCACTTGTAGGATAAGCATGAACTGGGCTGCCACTTCCTTTATCAGGACTCCCAATACTATGTTCTTCGACTACCATGGATGCCTGGTCTGTAAAAGCATAATCTTGTATATTTGTGATGACTGATGCCGTTTCACGCTCATTCATAAATGTGGACATGCCATCCTTTTCATCATTCACTCTTATAAAGTCCTCCTTGGTAAAATCTTTTGTGGAACCAGCATTTATTTCTTCCTTTATGTCATTATTCTCCTCCTCAATAACCTCACTTTCTATGTCTAAAAACTCAGATCTATCATTGATTACTTCATCAAGCACCTGATCAGAACAAACTCCTTCCTCTGACTGCATCTCCAATTCAGTTGGAAATTCCCCTGGATTGTTATGTTGAAGGTTGCATGTCTGGCTGCTGGTTGCGGTTTCCCCGTACAGAGTTTCAGCAGGAATTAGTTCAGATTCAGTGACAAAATCTAACATATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33280 lncRNA downstream 101975 15929041 ~ 15933858 (-) True G28232
TU33234 lncRNA downstream 247680 15786853 ~ 15788153 (-) True G28207
TU33217 lncRNA downstream 310377 15720767 ~ 15725456 (-) True G28191
TU33208 lncRNA downstream 353789 15681570 ~ 15682044 (-) True G28182
TU33196 lncRNA downstream 419085 15615025 ~ 15616748 (-) True G28173
TU33349 lncRNA upstream 77054 16122729 ~ 16122949 (-) True G28278
TU33332 lncRNA upstream 80229 16125904 ~ 16126299 (-) False eif4enif1
TU33333 lncRNA upstream 80251 16125926 ~ 16126299 (-) False eif4enif1
TU33409 lncRNA upstream 135400 16181075 ~ 16181718 (-) True G28325
TU33415 lncRNA upstream 150899 16196574 ~ 16196867 (-) True G28331
XM_026913026.2 mRNA downstream 11364 16011998 ~ 16024469 (-) True fkbp5
XM_026930718.2 mRNA downstream 59849 15960164 ~ 15975984 (-) True LOC113536636
XM_026930704.2 mRNA downstream 84346 15935781 ~ 15951487 (-) True LOC113536633
XM_034311668.1 mRNA downstream 125761 15899291 ~ 15910072 (-) False LOC113536620
XM_034311660.1 mRNA downstream 125761 15899291 ~ 15910072 (-) True LOC113536620
XM_034300875.1 mRNA upstream 2318 16047993 ~ 16056687 (-) False entpd8
XM_026915737.2 mRNA upstream 2318 16047993 ~ 16056680 (-) True entpd8
XM_026924815.2 mRNA upstream 28371 16074046 ~ 16083778 (-) False tgfa
XM_026924805.2 mRNA upstream 28371 16074046 ~ 16083776 (-) True tgfa
XM_026916183.2 mRNA upstream 61154 16106829 ~ 16119848 (-) False patz1
TU32920 other downstream 566604 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 574832 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 736814 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 1159843 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 1227280 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1468037 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 1903482 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 2025312 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2531549 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile