RNA id: TU33316


Basic Information

Item Value
RNA id TU33316
length 605
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G28258
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16037983 ~ 16039793 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTACCAGCatttatttcttcctttgtATCATCATTCTCTTCCTCGATTTCCCCAGTGTTGGTACCTTCTTGGTCCATATTTTGTTCCTGtatgttttctttgtcttttatcGCTTCCAGTTTGTTTTCCTGGTCACCTCTAGGGATTTGCCCTCTAAGGCTCTTTCGAGTTGAACCTATCTTCCTCCTTTTCTCAGAGCTGCTAAATTCCAAAGTTTCTTTTGTCACATCAAGCTGAGATGATTTTGATTCCTGTATCTGAACAAATGGGCTTGTGCTTTCAAGTTGCTCTGCTTCGGATTCCCTGTTAGTTGGATTCTCTAGATGTTCTTCAGATATGTTTTGGTTCTGATCAGATACGACTGCATGAATATGTTCTGTGTTCATCTGCATGTCTGACATGGCCTGTGTTTCAGGAATGAGCTCCACTGGGCCACatgtattataaacattaacttCACTGGCAACATGTTCATTATCAGGACTCCCATTACCATGCTTTTTGACTGCTAGGGAGACGTGTTCTGTGAAAGCATCATCCTGTATTTTTGTGATGACTGGTTCCATTTCTTGCTCATATAAAAGTGTTGACTCGGCAACATTCTC

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33280 lncRNA downstream 104125 15929041 ~ 15933858 (-) True G28232
TU33234 lncRNA downstream 249830 15786853 ~ 15788153 (-) True G28207
TU33217 lncRNA downstream 312527 15720767 ~ 15725456 (-) True G28191
TU33208 lncRNA downstream 355939 15681570 ~ 15682044 (-) True G28182
TU33196 lncRNA downstream 421235 15615025 ~ 15616748 (-) True G28173
TU33349 lncRNA upstream 82936 16122729 ~ 16122949 (-) True G28278
TU33332 lncRNA upstream 86111 16125904 ~ 16126299 (-) False eif4enif1
TU33333 lncRNA upstream 86133 16125926 ~ 16126299 (-) False eif4enif1
TU33409 lncRNA upstream 141282 16181075 ~ 16181718 (-) True G28325
TU33415 lncRNA upstream 156781 16196574 ~ 16196867 (-) True G28331
XM_026913026.2 mRNA downstream 13514 16011998 ~ 16024469 (-) True fkbp5
XM_026930718.2 mRNA downstream 61999 15960164 ~ 15975984 (-) True LOC113536636
XM_026930704.2 mRNA downstream 86496 15935781 ~ 15951487 (-) True LOC113536633
XM_026930683.2 mRNA downstream 128026 15899291 ~ 15909957 (-) False LOC113536620
XM_034300875.1 mRNA upstream 8200 16047993 ~ 16056687 (-) False entpd8
XM_026915737.2 mRNA upstream 8200 16047993 ~ 16056680 (-) True entpd8
XM_026924815.2 mRNA upstream 34253 16074046 ~ 16083778 (-) False tgfa
XM_026924805.2 mRNA upstream 34253 16074046 ~ 16083776 (-) True tgfa
XM_026916183.2 mRNA upstream 67036 16106829 ~ 16119848 (-) False patz1
TU32920 other downstream 568754 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 576982 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 738964 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 1161993 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 1233162 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1473919 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 1909364 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 2031194 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2537431 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile