RNA id: TU33626


Basic Information

Item Value
RNA id TU33626
length 1337
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G28508
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16358139 ~ 16359521 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGAATCAGTGATAATTAAGGCAAAAATGCTTTGCCATTagctaattattttattgcaccaaaactactaaactaaaaactaaactaaaatcaTAAACCTCTGCTTAAATTTCAGATTTCTAGTGCTGCATTTCTCATCCTTTCCTGACTGTAGTATTAATGACCTCCCATTATTTgcacttatgaaaaaaaaacatgcagtaatATTTATAAGATCACACCAGCTCATTTCCCAAAGTTGCCCCTGACTAATTAACGCTCTGAAGTGTCCCAAAGGCATTGTCACCTCAGAGAAATCACAAGGGAGAGTCTAAGCTCGGGAGAGCCTTGCTGGTTGCACCTTCATCAAAACAAACCTGTCTGTGGCATGCAACACAGCATTTACAGCAGGCCACTGAAGTGGCAATGGAAGTGCTTAGTCACGCTTATTAAAATGGCACCTTGGTCATCTGCACCTGAGGCTGCGCCTGATTGACCTCTCATCTGAATTACACATGAAACCAAACTCAGCCTGCACCAAACACAGTTAAACTAAGAAATACTAATCCAAATTAAATACTACACATTTGGCAAGCATTCATCTGAATAATAAAGAACATACAACATGCATCTCTCTAATTTTGAGTCTCATCTACTTAAGAGTGTTTATGACAGTTGTTTCCTGAGCCACTtaactaatgctaataataaaacatgatagaaCAAGCTggtgtttttaaagctttttaaagaGCGAAGACACCAAAATATATCGGACACTGGGGACAGAGCAAAAAGTGATATAAACTGAAAACACTACGACGTATGTTTTAGAGCTTCACTTGTCTATCCTAATAAAATGTACTAGctttgttataatgttataactTTGCATTTTGATATAGATGCTGCATATTTCCTGTTtagtatataaacaaataagttctcattttctttttgtttgttttgaaccGACCCAACAGGTTTGTCAGGTCATGGGGGTTATAGTTAATCTGTTAAGCATCTATATTTCTGTCTACTTTAAATCTATTAAGTCAGatcaatcatttttaaataaatcaaaaatagtAGAAAATTGATTGTATGTAAGTTACCATTTTGATTCTTGAGGTGGTCATTCAGGATGCAGCCGTGAACAAGAAATGCCATTGTGTCGCCTTGCTATGCCCATTTAACCAAAGGAGTCTACTTCCTGCTCCTTCCATTTGCCGAAGGGCCAACTGCTCCTTCCATGTTGACCGAAAGTTCACCAGCCTATTTGAGGAGAGCTGCTGGTGCAACAAATCAGCAGAACAATAGAAGTGGAATCTCAAGCACTACGAGAAACACAATCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33633 lncRNA downstream 28718 16329108 ~ 16329421 (-) True G28515
TU33473 lncRNA downstream 91384 16266556 ~ 16266755 (-) True G28385
TU33472 lncRNA downstream 92979 16264924 ~ 16265160 (-) True G28384
TU33471 lncRNA downstream 93897 16263614 ~ 16264242 (-) True G28383
TU33463 lncRNA downstream 97827 16259436 ~ 16260312 (-) True G28375
TU33656 lncRNA upstream 102581 16462102 ~ 16463933 (-) True G28537
TU33657 lncRNA upstream 102581 16462102 ~ 16489915 (-) False G28537
TU33936 lncRNA upstream 211269 16570790 ~ 16571524 (-) True G28779
TU34351 lncRNA upstream 694567 17054088 ~ 17054656 (-) True G29119
TU34418 lncRNA upstream 1033937 17393458 ~ 17394467 (-) True G29167
XM_026921515.2 mRNA downstream 3998 16346585 ~ 16354141 (-) True eno1b
XM_026921526.2 mRNA downstream 4568 16346585 ~ 16353571 (-) False eno1b
XM_034300908.1 mRNA downstream 11859 16327871 ~ 16346280 (-) False rereb
XM_026915484.2 mRNA downstream 11861 16327871 ~ 16346278 (-) True rereb
XM_034300126.1 mRNA downstream 58233 16288171 ~ 16299906 (-) False iho1
XM_026912883.2 mRNA upstream 13261 16372782 ~ 16386220 (-) True frs3
XM_034310265.1 mRNA upstream 13261 16372782 ~ 16379982 (-) False frs3
XM_026938369.2 mRNA upstream 34720 16394241 ~ 16398401 (-) True LOC113541386
XM_034310450.1 mRNA upstream 41428 16400949 ~ 16406482 (-) False si:ch73-15b2.5
XM_026938250.2 mRNA upstream 41428 16400949 ~ 16406482 (-) True si:ch73-15b2.5
TU32920 other downstream 888910 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 897138 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 1059120 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 1482149 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 913434 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1154191 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 1589636 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 1711466 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2217703 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile