RNA id: XM_026917841.2


Basic Information

Item Value
RNA id XM_026917841.2
length 3522
RNA type mRNA
GC content 0.40
exon number 4
gene id si:dkey-44g17.6
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17472330 ~ 17529315 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACACTACATTTACTGTCACATAATGGCGTTCCAGGCTCTACGTAGTACACTACATGTCCCATAGCGAGGCGTTTGTTATGCAGCCGGTGAGATTTTTGGATTCCAGTCGTCCAGCACTGTTCCCACCATTCCGCGTAGATTTTCTCTGAGAGAAGTGAAAGGTCGCCTGTCTTTctccagttttttttgttttgcttatcCATTTAAAGCCTATTAATAGTTATTGGGATTTTCTGTATTCGTATTGGAGTCATTTTGGTTGTGTATAATAGAGACAGTCGTACTTTACGAGTGAAGTAGCGTTACCTTACGCGCCGCTGTTGTCGGTTGGTCAAGAGTGCTTTTTAAACAGCTCTCGCGACGCGACGGTTAGTAACGCTGAGctcagGTCAGAGTTCAGTGTGTCTGAATCACAGGAGAGTCACACAGGAGTTCTCCAGCTCAACATAAGCCCATATCACATCACTCAGGTCTGTGAAGATCGCCAACAAGAAAAATGTCCTCAAAGATGCAGAGCTCAAATAACATAGCGCAGGCAAGAAGAATCGTACAGCAGCTACGGATAGAGGCAAACATTGAGAGGATAAAGgTTTCTAAAGCCTCTGCAGACCTTATGCATTACTGCAGTGAGCACGCCAAGTACGACCCTCTACTCATGGGCATCCCGGCCTCAGAAAACCCTTTTAAGGATAAGAAGCCCTGCACTATATTGTAGTGGGAAGCACTAATCATGTGCTCTTTGATGCCTCCTTTTTTATAGAGAGAATATTTTACCTTAAAGCATTCATACACTAGTCGCCTTAAAGTCAGCTAACCTCCTCATTCTCACTCTTCTTTTATTCTCCTGCCCTCCAGGCTAGAACAGGAGTCTACACTTGaaacatattcatttttttcacttctgttCTATTCAAGAAAATGAGACCAAAAACCTCTAAGTAAACAAGTTTTATGGTGCATTGACAAAGCTTGtgataggatttttttaacCCCACTATTGATTGCTAGAACTGAGAAGTTGTTTGCTGTGATTGTGCTATCTGATGTGGTCTAGACCAGACCGTTTTGcaaataaagaagaagaaaaaaaatctcagttggGAAGTACCCAAACAAAGAGCTCTACTCATCAAGGCCAATTCCGTTTTCTTTGATCATCATGCCCTCTTAATGTCTCAGTTCGGATAAGCAAAGCTCAGCAGTAGCGCTCTGACTCTCTGTTATATTCAGCCTTTCACCTTTCAAGGAAAGTGAGAGGAGCCCGGAGGCCTGAAACAGTGCTCTACATGTCTAATacgttttttttcccaacttttattcatttggcaagTGCATTTATCCAAAATGTCTTTCAGATGAGACAAAATGTAATTCAAGCAAAAAACCACCCAGTTACTAGTGCAGAACACTGTTCCACATAGTAATAAATCAAGGCAACTGGACTTATGGCTAAAGTCATTTATTCTTTAGCGAttgttcagtgaaaaaaaatccatttttcttCGGCATAATGCAGTCTGcctgtctaaatcatcacaagCCCACCACAAAAGGCATAGGTTGCCTCAGTTAAACcattaatgattttataaagTAGCAGAATATATCTGTATTAGTGCCTTCAGACGCTGGGCCATACCTCTGTGAGTCAAGTGACAGCAGACTACATGCTAAGGAAAAAAGTGATCCCAGTTTCCAGATGGGTGCTACTAGGGTTAATAGCATTGTGACAAGCTTTTGCCCAATTCATAGTTACTATTGTAATACAAGATCACAAAACACataagcaagtgtgtgtgaagttgcTAACTTTATACTGTATGATGTGAGTATGTGACATTGGGCCTAATTTGTCAAGGTggagacaaacaaataaattcataaattattcACAGGCGCATATCAAAAAATGTGgtattcagaaaaatgtttgtatcctcCAGAGTTTCTATAAATTTTCATGCGTTAAAAACTAAATGGAACCTCAATTGATCGACTTCATATTCTATGACTGGTATGAGTTGCTGCAATTTTATACACTGATTatgtttaaatagcttatttataAGTATActcacatttttataattaaagttTTGTGCAATTACTTAAAGAAAGCAATCtgaaacaaatccataaattaagaagAATAAGACTAGCCATTGAGTTAAGACATATGAAATGGCAGGTGGAAGGGTCTGTTGGACGATTTATCACACTCCATGTTCGGATgcgctctttcaccatttagtcaccagtttgttgttttcagctcagTTGTCAGTTTTGCCCTTTATGGAGTTTGTGAcatgactaaatgtaaatcagctgtgctgtgaacaCACCTGGTAGTTTACTGGTGATTGCCGTTCATGAACATGCACATGTGAGtatgaagaagaacaagaagttACCGAAGCATTTATGAATCTGgcgggattttttttttttttttagtttggcTTAcgaaaacatttaaacacaactttTCTAAAGGATTTATAACTGAGACCCTTTGGACACGGACTTGTCTGGGCTGATCGAATAGGTTTTGGGGTGAGGGGAAATTGTATACATTGTGGTTTTGctcaaacaaatgttttaaaactatGTCCACTAGCCTTGACATTTTACTACTATTCACAATAATGTGTATGACCAAAAACCTCATCCAATATGCGTATGGACCAATATCCATACGCAGTCAAGTTGACTGAACTTGTATTGTGATATTAAAGCTGATTCTACACTGACTAGTCTGCTCAGTCTAACCAGCTGTCTAATCTCTTGCAAACTTTGGGCCCTACTGAATTTTGTATTGTGCCATTCTGGGCTGGTTTTAATAATAAGCAAGGTTGAACCAAACAGGAATAGGAAAAAAGCACCAAATAAAGTAGCTCTACATACACTTTAACACAAGTCCAGTTGCCTTGTCTTAATTCTACTAGACACTGAAAGTGACCCAGATGACTGGTAGCCTTTAGAGTCCTGTTGCTCATTGTGGAGGAACCTGTGGCGTCACTCTGACGTAATTTGTCCTCAAGAGTACCAACACTCCCTCTTTAACTCGGCACATGTGAACAATAGAGGGCTTCACACAGGTCAGTGAAAGGTCGCCTCCTCTGTCAGAGCACTAAACCAACCATGCTTTCTTTTCACCCTTCCCTTCACAACGTTGCCAAAACCCCACACATCAGCTTTTCCACAGGACGATGGGAAGCTCTCTTGGCTTTTGCATAGAGCAAAAGTGAGTGCAGTGCTGCAGGAATGAGAAAAAACATCATTATTGTTCAGGGGTATTTTAGGCTTACATGAATTATATTTCATAACCCCTGCCAAAAGCATGTTTGATAAGTGAGAAGCATGACCCAAATTCTCCTGCCTACCCAGTTTTTGCCTATGCCTTAGAAAACCTTAGACTTTTGTTGTTGTCCTGTTTATGGTAGATACAGTAGCAATATATATGATTGCAGATCATGGTACAGTAATATATTATAACCCTTTAATGATTATATGCCTTA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34432 lncRNA downstream 5289 17454285 ~ 17468157 (-) True G29176
TU34426 lncRNA downstream 39278 17433453 ~ 17434168 (-) True G29174
XR_003403011.2 lncRNA downstream 43960 17425604 ~ 17429486 (-) False LOC113528975
TU34475 lncRNA upstream 108029 17637327 ~ 17638017 (-) True G29213
TU34488 lncRNA upstream 171463 17700761 ~ 17714365 (-) True G29223
TU34503 lncRNA upstream 255177 17784475 ~ 17842820 (-) False G29237
TU34502 lncRNA upstream 310264 17839562 ~ 17842820 (-) True G29237
TU34596 lncRNA upstream 618930 18148228 ~ 18148749 (-) False zgc:153916
XM_034312419.1 mRNA downstream 10821 17438640 ~ 17462625 (-) True sec16b
XM_026917735.2 mRNA downstream 179441 17220584 ~ 17294005 (-) False pbx1b
XM_026917727.2 mRNA downstream 179441 17220584 ~ 17294005 (-) True pbx1b
XM_026930064.2 mRNA downstream 270197 17197989 ~ 17203249 (-) True LOC113536221
XM_026943221.2 mRNA downstream 281987 17186645 ~ 17191459 (-) True med8
XM_026917804.2 mRNA upstream 1261 17530559 ~ 17539905 (-) True dr1
XM_034300500.1 mRNA upstream 14378 17543676 ~ 17547134 (-) True LOC113528309
XM_026917713.2 mRNA upstream 21638 17550936 ~ 17567323 (-) True scinla
XM_034298787.1 mRNA upstream 48093 17577391 ~ 17579519 (-) True si:ch73-389b16.1
XM_034313144.1 mRNA upstream 54353 17583651 ~ 17614589 (-) False btbd8
TU34409 other downstream 193273 17272955 ~ 17280173 (-) True G29158
TU32920 other downstream 2004217 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 2012445 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 2174427 15297309 ~ 15299019 (-) True G27843
XR_003403257.2 other downstream 2597456 14872949 ~ 14875990 (-) False pxmp4
TU34529 other upstream 419859 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 541689 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 1047926 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34886 other upstream 1264734 18794032 ~ 18806750 (-) False LOC113537624
trnag-ucc other upstream 1286961 18816259 ~ 18816330 (-) True trnag-ucc

Expression Profile