RNA id: TU34503


Basic Information

Item Value
RNA id TU34503
length 2701
lncRNA type sense_over
GC content 0.34
exon number 3
gene id G29237
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17784475 ~ 17842820 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAATAGTCCTTGTTATTGCTACATGGATAACCCCAGTGCTGTAAAAGCAAATAGCTTAATCTAGATGAAGCCTTCCATGTTTTCTGGACAGTGAGTGCAGTGAAAAAACATATATGCTtacagtctggaaaaaaaaaaatcaatctgtATTATTTGTACTAGCAATTTTCTTTATTACAGTTGCCCTAGTTCAGTGCTGTGTACATCCTGAGGCCTTTACTAGAGCATTTATCTTAAATTCTGTCAGCTTTAAAGAAGACCGAAACATTCATAAGTAACATTTGTTTGTCCAGTCATTTTCACTCAGTAATAGCTACTACTGCTAGCACAGTTATAGGATTTCTCATGTTGTTAGTACCAAGTTAACATCAGTTTTAAAACACTGGTTTTATGCATACAATAGTACAAGTTTCAGACaaatgagacattttttttttttttacttttatctaTAGTTTTGCAGTGAACATTtcaataataatgttaattgcTCTGTTAACACAGGGGATGGGGAAACTACCATAACTGCTAGAGTAGCATGTCTACTGTAAAAAATCTTAACAAATGGGCATATTATAATTAGgctaaagcaaaaaaaaaaaaaaaaaagaaagaaaaattagaaCATATCTTGCTTCACCGTATATGCTGCAGAGGGCGAATAGCAAATCTTATAATCTGGAAAATATGGTATGTCACTTATTCACATATAAAACTGTTCATAAATAGTTTAAGAACAGAAAGGTAATAGATTATTTCTCAATACATCCTAAAGTAAGAGTTGACTATTTGGATGCCTCACAGTTGAGGTGAGTATAATACATAAACAGTGCCTCCACTGAAATCTGGCATCAGAACTGATGGTGTATGATATTCCTACAAAAAGCAGTGTATGCAGCTGTtacagcagtgtagtgtagtaacACAGACCAGTGTGCTTTTAACACATCTAGGTGAGCTTATATCAggagttttgtactgtcttattaataaacatatatagCATGTGTCCTTCTGGTATGCAATGTGTTGAGACTACAGTTCTTTTGATTTAGTGTGTCTTAAAATGCAAACAGCGTCTAAAGGCCCTTTATCATGCATATAGAAATGCACCTAAATTAAAATCCTTGGCAGAAATTAAAATTCAGGACACACTGCATCAAAAACAAATATTGAAAACAGAATGGTGGATTATATATgggttatatattttataatttttggttcatttggtTTTTGTATCATTGCATAAATtctatcaatttttttttttgcattttatttaaggGGTTTGAATAAAACCCAACACTAATCACTAATAATcactaataaacaaacaagtagcATAAAATGCTAATCCTGCACTGCAGGTGATTATGGCTGATAATTGGCCACAGCTGTTCAGTTCTGGAAaatgtgatgtgtatgtttgtatgtatgcatgAGAAAAGgtacacatacagtcaggtcgggaagtatttggacaaagtcacataattgtaaatataatcataattttaatacttggatgaaaatcctttgcagtcaatgactgcctgaagtctggagcccatgttatcaaaactcaaattctgagtttcctccctggagatgctttgccaggccttcactgcatttttgtggaacctcttaaaataaagctgaaagtctacacttcgaggtggtggtgtataaaggcaaaatcacaaaaactctgtcattgtccaaatacttcgggacctgactgtatgtagtGCACATCAGATAAAGCAGTGATACAGGTGGCCCAATTCAGGAAACACAGGGATTCAGACCAGGAAATGACATGGGGGGGACGCAGAATGGCAGATCGAGATCGAATAGCAACACAGAAAAAGGTAAGAATATGAGGAACACAGGATGCAGAACACAACGGCCCTTCTTCATCAAATTTGCGTAGAAACGAGCACAGATTCAAATTCTTGCATGGAACCGTCATATGACATCAAAACAACTGGTGATTCGAGAGCAAATCATCAACTGCAGTGTGGTAACAAGCTCCCACCCATTAGTCCCTtatgtaaatattacacacagtcagagaattattggcacccttgttGAATCTGACAAAATAAGATTAGGAAAAATATCTTTGTGGTTGTTTAGCTTAATCTCACTCTGAAGTCAAACCTTTCATTCAAGTACATTAATTCTAAGAAAATACGCCCTTatcaaaaatatacttttttttaatacagatctgccaaaaaaaaaaaaaaaaaaaaacaaggaaactaATGGTGGAATTTGCGTACGCTCGCTCGTTTTACAATTAGATCTGACTGTATACAAGTTTGATGAATAAGGGCCAGGCTTTTTAACCACTAATTAAGagtgaaatgatttataaaggGAAACTGTTTGATACTTTGTTGtatttaatcttaaaaaaaaaaaaaaatcttttcagtgGCCAAAATTTCAGCGCATCCCTACCTACACAAGAATTACACTTACAGAAAAGGTCTTAGCAataaatgtaagtgtgtgtgcaccacGTATGATTGTGGTTTAAAAATAGATCAGAGCACATTATCTCTAAGCAAATATTCAACTCTGTATAAGACTATATGAACATAGGAATGTGTCAATACCAGACTTTACTTATGACAAATGTCATACCTATAAGgggaacattaaaaaaaaaAGTAAAGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34488 lncRNA downstream 70110 17700761 ~ 17714365 (-) True G29223
TU34475 lncRNA downstream 146458 17637327 ~ 17638017 (-) True G29213
TU34442 lncRNA downstream 255271 17472330 ~ 17529204 (-) True si:dkey-44g17.6
TU34457 lncRNA downstream 273020 17487361 ~ 17511455 (-) True G29196
TU34432 lncRNA downstream 316318 17454285 ~ 17468157 (-) True G29176
TU34596 lncRNA upstream 305408 18148228 ~ 18148749 (-) False zgc:153916
TU34718 lncRNA upstream 609648 18452468 ~ 18452976 (-) True G29439
TU34829 lncRNA upstream 771537 18614357 ~ 18614724 (-) True G29541
TU34830 lncRNA upstream 772049 18614869 ~ 18615874 (-) True G29542
TU34839 lncRNA upstream 791258 18634078 ~ 18634357 (-) True G29551
XM_026917624.2 mRNA downstream 128265 17637150 ~ 17656210 (-) False brdt
XM_026917633.2 mRNA downstream 128265 17637150 ~ 17656210 (-) False brdt
XM_026917615.2 mRNA downstream 128265 17637150 ~ 17656210 (-) True brdt
XM_026917640.2 mRNA downstream 128267 17637150 ~ 17656208 (-) False brdt
XM_034310162.1 mRNA downstream 152331 17618116 ~ 17632144 (-) True ephx4
XM_026924048.2 mRNA upstream 240901 18083721 ~ 18090316 (-) False znf326
XM_034311248.1 mRNA upstream 240901 18083721 ~ 18090316 (-) True znf326
XM_034314495.1 mRNA upstream 251347 18094167 ~ 18106279 (-) False lrrc8db
XM_026920117.2 mRNA upstream 251347 18094167 ~ 18106279 (-) True lrrc8db
XM_026920109.2 mRNA upstream 251347 18094167 ~ 18103910 (-) False lrrc8db
XR_004577384.1 other downstream 255160 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34409 other downstream 504302 17272955 ~ 17280173 (-) True G29158
TU32920 other downstream 2315246 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 2323474 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 2485456 15297309 ~ 15299019 (-) True G27843
TU34529 other upstream 106337 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 228167 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 734404 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34886 other upstream 951212 18794032 ~ 18806750 (-) False LOC113537624
trnag-ucc other upstream 973439 18816259 ~ 18816330 (-) True trnag-ucc

Expression Profile