Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU34596 |
| length | 522 |
| lncRNA type | sense_over |
| GC content | 0.62 |
| exon number | 1 |
| gene id | zgc:153916 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 18148228 ~ 18195628 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU34503 | lncRNA | downstream | 305408 | 17784475 ~ 17842820 (-) | False | G29237 |
| TU34502 | lncRNA | downstream | 305408 | 17839562 ~ 17842820 (-) | True | G29237 |
| TU34488 | lncRNA | downstream | 433863 | 17700761 ~ 17714365 (-) | True | G29223 |
| TU34475 | lncRNA | downstream | 510211 | 17637327 ~ 17638017 (-) | True | G29213 |
| TU34442 | lncRNA | downstream | 619024 | 17472330 ~ 17529204 (-) | True | si:dkey-44g17.6 |
| TU34718 | lncRNA | upstream | 303719 | 18452468 ~ 18452976 (-) | True | G29439 |
| TU34829 | lncRNA | upstream | 465608 | 18614357 ~ 18614724 (-) | True | G29541 |
| TU34830 | lncRNA | upstream | 466120 | 18614869 ~ 18615874 (-) | True | G29542 |
| TU34839 | lncRNA | upstream | 485329 | 18634078 ~ 18634357 (-) | True | G29551 |
| XR_004579394.1 | lncRNA | upstream | 645276 | 18794025 ~ 18816812 (-) | True | LOC113537624 |
| XM_026927028.2 | mRNA | downstream | 21316 | 18116405 ~ 18126912 (-) | True | lrrc8c |
| XM_026927035.2 | mRNA | downstream | 21317 | 18116405 ~ 18126911 (-) | False | lrrc8c |
| XM_034314495.1 | mRNA | downstream | 41949 | 18094167 ~ 18106279 (-) | False | lrrc8db |
| XM_026920117.2 | mRNA | downstream | 41949 | 18094167 ~ 18106279 (-) | True | lrrc8db |
| XM_026920109.2 | mRNA | downstream | 44318 | 18094167 ~ 18103910 (-) | False | lrrc8db |
| XM_026920882.2 | mRNA | upstream | 300508 | 18449257 ~ 18464571 (-) | False | lmo4b |
| XM_026920872.2 | mRNA | upstream | 300508 | 18449257 ~ 18464571 (-) | True | lmo4b |
| XM_026916382.2 | mRNA | upstream | 352789 | 18501538 ~ 18585762 (-) | True | hs2st1b |
| XM_026916472.2 | mRNA | upstream | 354168 | 18502917 ~ 18586226 (-) | False | hs2st1b |
| XM_026927315.2 | mRNA | upstream | 467228 | 18615977 ~ 18623608 (-) | True | LOC113534471 |
| TU34546 | other | downstream | 75319 | 18070987 ~ 18072909 (-) | True | G29279 |
| TU34529 | other | downstream | 198510 | 17949157 ~ 17949718 (-) | True | G29263 |
| XR_004577384.1 | other | downstream | 618913 | 17513712 ~ 17529315 (-) | False | si:dkey-44g17.6 |
| TU34409 | other | downstream | 868055 | 17272955 ~ 17280173 (-) | True | G29158 |
| TU32920 | other | downstream | 2678999 | 15461950 ~ 15469229 (-) | False | oxtr |
| trnae-cuc_6 | other | upstream | 428475 | 18577224 ~ 18577295 (-) | True | trnae-cuc_6 |
| TU34886 | other | upstream | 645283 | 18794032 ~ 18806750 (-) | False | LOC113537624 |
| trnag-ucc | other | upstream | 667510 | 18816259 ~ 18816330 (-) | True | trnag-ucc |
| trnap-ugg | other | upstream | 668378 | 18817127 ~ 18817198 (-) | True | trnap-ugg |
| trnap-ugg_1 | other | upstream | 1231692 | 19380441 ~ 19380512 (-) | True | trnap-ugg_1 |
