RNA id: XM_026917991.2


Basic Information

Item Value
RNA id XM_026917991.2
length 4496
RNA type mRNA
GC content 0.48
exon number 22
gene id zgc:153916
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18148228 ~ 18195628 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttttttctttcgacTTCTTCAGAATACATTTTCGTTATACTGGAAGAATTTTGGCGCACGAAGTTTAATAAGCGGCCGACATGGAAACTGGGAAGCAGGGACAGAGCGGCGGAAAAGCTACACAAGCGAGGGCTTATTCAGTTCTCTAACGCGGAAAATAAGAGATCTCGGGGGCAGACGTGGTGGATTTTGACGACTTCTTGGGACGTTCTGCCTCCTGTTTGCTCTCCCGAGTTTTTGATTCAAAGTTGAGGGGGCAAAATGGCGGCCGATTCCGTGCAGagtgACGCTCGAGGTCACATGGTTTCGGATCGTCTGAGCCTGATGGGTCTCAGCATGGACCTGTCCGACACCACAGTGCAGCAGAAGCTGGACGAGATCAAGGACCAGATCAAGCGCGAGCTCCGCAAAGAGCTCAAGATCAAGGAAGGAGCGGAGAACCTGCGCAAAGCCACCACGGACAAGAAGAGCCTGGCTTATGTAGACACCATGCTGAAGAAGAGCAATAAGAAGGTGGAGGAGCTGCACCAGGAGCTGCAGGAACTCAACGCCCACATCGTGGTCAAAGACCCCGATGAACTCCGAGtttCAGAGTGCCCTTTGACTCCAGACACTCCATGCAGCACCAACAGCAGTCGTCTGGCTGCTCTTAAGAAACAGAACGACATCGAGCTCAAAGTGAAGCAGGGTGCTGAGAATATGATACAGATGTACTCCAACGGTTCCTACAAGGATCGTAAGCTGCTTGCCATGGCCCAGCAAATGCTCCAGGACAGCAAGACCAAAATTGAATTCATCCGGATGCAGATCCTCAAAGCGAGTCAGACCAATGAGATGAGTTATGAGAATAATGAAGTGCCTGCGAACAAGTCTATAATCAGTCCTCTGGACCTGCGGCTGGAGGAGTTGCGACATCACTGCCGGATCGAGTCTGCCGTGGCCGAGGGAGCCAAGAACGTCATGAAGCTGCTCGGCTCAGGGAAAGTTACAGAGAAAAAAGCTCATTCAGAGGCCCAGGCACGCTTTAACGAGTCGAGTCAGAAGCTGGACCTGCTGAGGTATTCTCTGGAGCAGAGGCTGAGCGAGCTGCCGCAGAGCCACCCAAAGGCCAGTCTGATCTCAGAAGAGCTCCTCATGATGGCCACTCCTCAGAGTCCACGCCAGAGCATCATCTCCTCCCACAACCAGTACAGCACTGTGGCTAAACCAGCAGCTCTCACAGGAACATTGGAGGTGAGGCTCATGGGCTGTCAGGATCTGCTGGAGAATGTTCCAGGCCGGTCTAAAGCAGCATCTGTGTCCCTGCCTGGCTGGAGCCCGAGTGAAACGCGCTCCTCCTTCATGAGCCGAACAAACAAGAACAAATCAGGCAGCAGCAGAAACCTCTCCAAAGCTGACGAGCTGTCCAATGAGATCAGTGCTGTTCTGAAACTGGACAACACAGTCGTGGGGCAGACGAACTGGAGACCAATCAGCAACCAGTCCTGGGACCAGAAATTCACACTGGAGCTCGATCGGTCTCGTGAGCTGGAGATCTCTGTGTACTGGAGAGACTGGCGCTCTCTGTGTGCTGTTAAGTTCCTAAGGCTGGAGGACTTCCTGGACAACCAGCGTCACGGCATGTGCCTCTACCTGGAGCCTCAAGGAACTCTGTTTGCTGAGGTTACATTTTTCAATCCAGTCATCGAGAGGCGACCAAAACTACAAAGGCAAAAGAAAatcttctcaaaacagcaagGTAAAACGTTCCTGCGTGCACCTCAGATGAACATCAACATTGCCACTTGGGGGCGTTTGATGAGAAGAGCAATCCCATCCGTCAACAATTCTTTCAGTCCTCAGGTGGCTGAGCTCGGATCAGCGCTGAGCCCTGAAACAGCAATCCTCGGCCATCCAGACTCGCCGTCTCTGTCCAGTGATCCGACCGTTACCAAATTAGACTTTGACAAAGGCGCCACTCCTCCTCCAAAACGCCATCCCACCCCTGCTGCTGAGctagaagaagaggaagaagaaccaCCATCACAAAACAAAATCCCTGATGGGAAGGAGGTTCAGGATGCATTAGCCACATTTGACTTCCTGAATGACAGCCGGAACAGTACGGTGTCCAAGCCGGAATATGATAGTCTGGTGGAAGATGAAATTCAGCAGCCTGATCTGGAGCTTACAGAGCAACACCATATTGATCCGAGaGAAGAGCCAGACATCCAGTTCAGTCTCAAAGACTTTTCTTGTGTGGCTGTTCTGGGCCGTGGACACTTTGGAAAGGTCTTACTGGCAGAATATAAGAGCACTGGGGAAATGTTTGCCATCAAAGCTCTGAAGAAAGGGGATATTGTTGCTCGTGATGAAGTTGACAGTCTGATGTGTGAGAAGAGGATCTTCGAGACGGTGAACAGTGTCCGGCACCCATTCCTGGTCAATCTCTTTGCTTGCTTCCAGACCAAGGAGcatgtttgttttgtaatgGAGTATGCAGCAGGAGGGGACCTGATGATGCACATCCATGCCGATGTCTTCTTAGAGCCACGTGCAGTTTTCTATGCTGCCTGTGTGGTCTTGGGCCTGCAGTTTCTACACGAGCATAAAATAGTATACAGGGACTTGAAGCTGGATAACCTGTTGCTGGATACCGAAGGATATGTAAAGATTGCTGACTTTGGGCTCTGCAAAGAAGGAATGGGCTTTAGAGATCGCACGAGTACATTCTGTGGCACTCCTGAGTTCCTGGCTCCTGAGGTCCTGACAGAAACATCATACACACGGGCTGTGGACTGGTGGGGTTTGGGTGTGCTCATCTTTGAGATGTTGGTTGGAGAGTCTCCATTTCCAGGTGATGACGAAGAGGAAGTGTTTGACAGCATTGTCAACGATGAAGTCCGTTACCCACGATTCCTCTCCACAGAGGCTATCTCCATAATGAGACGACTGTTGAGGAGAAATCCTGAGCGACGCCTTGGTGCAGGAGAGCGAGACGCTGAAGAAGTCAAGAAGCATCCGTTTTTTAGAAACATGGACTGGGCTGCTCTGTTGGCTAAGAAGATCCGGCCTCCGTTCATCCCCACCATTAAAGGACGGGAAGATGTTAGTAACTTTGATGACGAGTTCACTTCAGAGGCTCCAATCCTGACTCCACCACGTGAGCCCAGAATCCTGACCGCTTCAGAACAAGAGCTCTTCACGGACTTCGACTACATCGCTGACTGGTGTTAGCTCTTCCAGCTGACCATCAACAGCCCACACTCACTCAATACTGTGAACCAAACGGACAAACGAGGCTCACTGCCAGAGCCAGAGAACGTCTCTGTAAGGACCACTTCCCTCTCTCTGCTCTTAGCTGTGCCAGCTggcactgtttttttccccccctttaaaagaaaatgttttaccAGGACTTTCATTCACCTAGAAAAGTCATGGTAGCCCaacatggcatttttttttttttttgtcaagagcACTGGGATTTCTCATGAGTGGTCTCCACATTTACAAGTTCTCCTCTTTAATGAAGTCCTCTTTTGTTGGCTGTTCAGAGAAAACACTACAGAACTTCTGTTCCACAGTCTAACCAAGTGAAACACTACAAAGACTTGTTTTTTGAAGCTTATAGACAGTCCCCACTTTACAACACTTATCTTTTGATTCTCATATTTATTTAGTGTCTCCCTCCCCATGGTGCCTTAAACTCATCACAGATAGAGGGCTTCCAGAAAGGCAGCATCAGGTACTGAAAACCTCCCAACACACACTGCCAAACCAGCTCTTTATGCAATCTGAGGAGCCCTTGGCCAAGACCACCCACCAGACCAACTTCAATCTTGACTTAACATgaaagtcactttttttttcatctttggTGGTTTTCAGACTTAATTTCCACTTAAACATGTATTCATATCATAACTGAAAAAAGTGTAacttatagttttatataatatttttaggaAATTAGCATCTTGGATCTGCTGTATggtatgcatatgtgtgttctttttttttttttttttttttttttaaatatatgaattttatgGTTATCATTAAGGAGAGGGCAGCTCAAATCACAGAGCAATCATAAACCTGACAAATggaatgtaaaaatgtatattcatCAAAAAGAACACAAACGTGTATATTTTTGGCACATGGATATGCCAAAGCAGCCTGTATTTTTAAtagtctgtttttaaaatgatgatcATAGAGTGACTCTTCCAGATCTTTCCTGACATTCGGTCACAGATGTTTTCACACAGTTTGTGGTTCTGTGTGCCAAGCAATAATCCTGTTTTGAAAATCAGGAAGTGGACATTTGGGCATTGCCCGGCATTCCTGGTGGATGAAACCCCTGGCTACAAGTGTTTAATCCATGGACTGCTAACACGCAGCAGACTCGTCCCCTCTGTCAGAAGGAGCTCTTATGGAACTCTCGTCAATGATTTCACTCTGTGTATCACCAAACCTTTTACAAATACACTCTGTACCCACA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0007155 cell adhesion biological_process
GO:0007165 signal transduction biological_process
GO:0005856 cytoskeleton cellular_component
GO:0030496 midbody cellular_component
GO:0032154 cleavage furrow cellular_component
GO:0005634 nucleus cellular_component
GO:0030027 lamellipodium cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K23691 PKN2; serine/threonine-protein kinase N2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34503 lncRNA downstream 305465 17784475 ~ 17842820 (-) False G29237
TU34502 lncRNA downstream 305465 17839562 ~ 17842820 (-) True G29237
TU34488 lncRNA downstream 433920 17700761 ~ 17714365 (-) True G29223
TU34475 lncRNA downstream 510268 17637327 ~ 17638017 (-) True G29213
TU34457 lncRNA downstream 636830 17487361 ~ 17511455 (-) True G29196
TU34718 lncRNA upstream 256840 18452468 ~ 18452976 (-) True G29439
TU34829 lncRNA upstream 418729 18614357 ~ 18614724 (-) True G29541
TU34830 lncRNA upstream 419241 18614869 ~ 18615874 (-) True G29542
TU34839 lncRNA upstream 438450 18634078 ~ 18634357 (-) True G29551
XR_004579394.1 lncRNA upstream 598397 18794025 ~ 18816812 (-) True LOC113537624
XM_026927028.2 mRNA downstream 21373 18116405 ~ 18126912 (-) True lrrc8c
XM_026927035.2 mRNA downstream 21374 18116405 ~ 18126911 (-) False lrrc8c
XM_034314495.1 mRNA downstream 42006 18094167 ~ 18106279 (-) False lrrc8db
XM_026920117.2 mRNA downstream 42006 18094167 ~ 18106279 (-) True lrrc8db
XM_026920109.2 mRNA downstream 44375 18094167 ~ 18103910 (-) False lrrc8db
XM_026920882.2 mRNA upstream 253629 18449257 ~ 18464571 (-) False lmo4b
XM_026920872.2 mRNA upstream 253629 18449257 ~ 18464571 (-) True lmo4b
XM_026916382.2 mRNA upstream 305910 18501538 ~ 18585762 (-) True hs2st1b
XM_026916472.2 mRNA upstream 307289 18502917 ~ 18586226 (-) False hs2st1b
XM_026927315.2 mRNA upstream 420349 18615977 ~ 18623608 (-) True LOC113534471
TU34546 other downstream 75376 18070987 ~ 18072909 (-) True G29279
TU34529 other downstream 198567 17949157 ~ 17949718 (-) True G29263
XR_004577384.1 other downstream 618970 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34409 other downstream 868112 17272955 ~ 17280173 (-) True G29158
TU32920 other downstream 2679056 15461950 ~ 15469229 (-) False oxtr
trnae-cuc_6 other upstream 381596 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34886 other upstream 598404 18794032 ~ 18806750 (-) False LOC113537624
trnag-ucc other upstream 620631 18816259 ~ 18816330 (-) True trnag-ucc
trnap-ugg other upstream 621499 18817127 ~ 18817198 (-) True trnap-ugg
trnap-ugg_1 other upstream 1184813 19380441 ~ 19380512 (-) True trnap-ugg_1

Expression Profile