RNA id: TU34947


Basic Information

Item Value
RNA id TU34947
length 2958
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G29612
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18883984 ~ 18887011 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAACTGAAGTTTATAACCACTATCCATATAGCTGTTTTTCCTGGATGATGGATTCCTGCTCTTACACTATGAAGATCTTCAAGAGTAAAtcaaacatgcaaaaatattttctccATATTTAACAGAGTAAATAATGCTGCTTTCAAGTCCTTCTCAGAAGTTCAAACTTTAGGAGCGTTAGTCATAAGTAAGGCATGACATGCAGAGAGAGGATGTTTTGCATTAGTGAAAGGAAATGAATAACAAAGGGTGCACATTAGCTGAGTAGTGCTTTCATTTAGTTAACAGTGTTGGATCATATTGTACATGCTCCAGGTTTTCCTATGTGGAGGCATGTAAGcccttaaaaaaacatttttagtctGTAAGTGTTTGTGTCGCTGCTGAGCAACAGTAATACAAGTAGCTTACTGTCTATagctgtgcttttttaaaatctctgtgGACGCAACGTCTGTATTGGCAGCAGCCatgatttttgtaaaaatgagtTTCAGACTAGTAATTACAACATTGTGGTGGCTCTCATcacataattattatatttccgGCAGGCCCTGGCAAGGCAGGCATGTGTGATGTACACCCACGAAATAAATTTTACCCCCAGTCCCAGTATCTTAAAGGAAACCAAAACACCAAAACTAATATCATTTTTGTCTATTACTATAACGTCTCTAGCACTGTTCCTGCTGCAGATAACACACATCATATAGCAAAGATGAGCCACTCTAGTCTACTCTATTCTTTTCTAGAAAGTTAAACAGTGCTTACAATATCAGCAAAACAATCCACTAATcacaacacaaaacagcagCCAGTTGAACGCAAGTATGAGCATACGTCAGGGTATAAAGTCAGTCCTAAACTATACACTGAAAGTAGTTGGTCTAAAATTACTGCAGTGTAGAATTTCGCTTGCTGCGCAGACACCTAAGGTACATCACAACTAGTAGCgatcaaatgattaaaaactttTGTCAGACAGAATGAGATATTTGATCATCACATGCCGAACAGAAACAGGACGaaacaaacaggaaatactaCATTCTGGGAAGCAGGTAGCGtctgttttatttacttcaaaCAAGGTCCATCTCTCAAGttagtcattttaaaaatgtcattttcttaATGCTATTTTCTTAACAaaccactgcaaaaaaaattaatggagCAGCTGCAAGCTTAATCTGCATTTGAAGACACTGAATGATGAAATAAAGTACAACATTAACACAgcagtaaaatgttttgtaatgtaTCTTTCTAATAATCTCAGTTTGACCAGTCTGACACTTTGTGCTACCACTTCAATGCTTGTTACACTGCCTGCCAGAAAAATAGCCTATTTGTAGTTCATCCCATCATCCCTTATGTTTATATTTGCCACTACAGTGCATATCAGTGAGGCGGTCATGTCCAGCACAGGTAACAAAAATACTTTCAAAGTAAAAAACCATTAAACTcccaacaaaataataataataaaaatgtatttgtatagtCATATAGTCATAAATGTACTCTTTACTCTGCACACTTTGAACAGAATTACTGAATAGTTGCGGAAAGGCAGAACACTCCCTTAAAAATTTACATCAAAAAGTATACCTACTGTAGGGGTGTAATGAAATGCCACtatgtgtatctgtatttatttagtgctcaaatatacatataaatttccttattcagatttaaactggAATGTGTGTACGGTCTAACCAGAAAGGTTTTTTACTACTATGCCCTggaaacacagaaataaacaggctgctattataacaaatatacattatattaatatatatattaaatatattataatatatcaTAACAAATggcaatttgcagaacattctgtttttttcaactcctgaaccagaTTCCATGTGGAGCTTTCTGTCTTCTATCTAATGGAACTGAGTAAGCAAACAACAATGCCTTTCCAAAATCAGGGAACTGTTGTTTATAGTTGACAACAGctatctaataatattttatgagAATTTCTTCAGTTTTGCAGAAGGTTtgtaacatttcaaaaaagCCAGAAAAGTTTGCTGGACACTCCATCAGAATCTACCACAAAGTTGGCGTGAGCCAAACTGGGGTCCTTTAAACTACATTCCATTATAATGACTGTATGATGTTCTGAGAAGATTTTCGTTTAATAATGTTGGAGGATGTTCATTATTTAGGTCAGGCTACTGGAGCAAACCactaaggaaaaaaatgaatagtgcaaCTCCTATTAGTATTATGTTAATTAACTTGGACACTGGTCCCCAACCAGGGTTGCCAAGTTCTGCATGTACCATCCATGTATTGCAGATACGGCAAATTAGTGATGTGTTACCTTATCCTCCACACTaatactgagaaaaagaagaaatttgtGTCCACCTTTTCATAAGTCTGAATATTTCAGgctagatataaataaatacatataaaacaaGTGCTGGTGGTTTGGTAGGATGAGTCTAGTTTGAGACATGTTCATGGTGTTTGCTACTTATAGTGCATTGACAAATTATTGCTGTCACATGTACCACTATttaccaaaacacacactgaaagaagAATACAGGAAACCACTTTCCCCGGTTAAATGAAGAACAAACTGAATGTTACTGAGGGTCTAATGCATTAAAGCTAttctgacaaaaaaatatataagatttTCAAAATATATGCAAAACTACGGTGGGACACAAGCTTGAGTGTGATATGTACAAGGAAATACAAAACCTGAAACCACAGGTGttcagtaaaagtaaaatacacAGGACTAGTATTATTTGCATGATGTTATGCACTGTTTCTATGGTCACTATGTGCAGTGAGGACAAGGATGGTAATGGTCTTACACATGTCTGCGATGGATCTCCATGATCTTCTCCTGCAACTGCTCCTGGTGCGGCAGCAGCTTAGTGAGCTTCAGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579394.1 lncRNA downstream 67172 18794025 ~ 18816812 (-) True LOC113537624
XR_004579395.1 lncRNA downstream 76094 18794025 ~ 18807890 (-) False LOC113537624
TU34889 lncRNA downstream 77234 18794032 ~ 18806750 (-) False LOC113537624
XR_003403788.2 lncRNA downstream 77536 18794025 ~ 18806448 (-) False LOC113537624
XR_004579393.1 lncRNA downstream 77568 18794025 ~ 18806416 (-) False LOC113537624
TU34949 lncRNA upstream 3706 18890717 ~ 18895805 (-) True G29614
TU35046 lncRNA upstream 97051 18984062 ~ 19049735 (-) True G29678
TU35173 lncRNA upstream 371939 19258950 ~ 19259178 (-) True G29793
XR_004577309.1 lncRNA upstream 496303 19383314 ~ 19385251 (-) True LOC117596148
TU35304 lncRNA upstream 517397 19404408 ~ 19404621 (-) True G29905
XM_034312132.1 mRNA downstream 48195 18820057 ~ 18835789 (-) True hdlbpa
XM_026912723.2 mRNA downstream 192902 18688598 ~ 18691082 (-) True sox14
XM_026927315.2 mRNA downstream 260376 18615977 ~ 18623608 (-) True LOC113534471
XM_026916472.2 mRNA downstream 297758 18502917 ~ 18586226 (-) False hs2st1b
XM_026916382.2 mRNA downstream 298222 18501538 ~ 18585762 (-) True hs2st1b
XM_026927091.2 mRNA upstream 29614 18916625 ~ 18927201 (-) True stk25a
XM_026916714.2 mRNA upstream 70762 18957773 ~ 18961671 (-) True dtymk
XM_034310739.1 mRNA upstream 77280 18964291 ~ 18969451 (-) True agxta
XM_034310741.1 mRNA upstream 77282 18964293 ~ 18969447 (-) False agxta
XM_026916667.2 mRNA upstream 83297 18970308 ~ 18976937 (-) True zgc:103559
trnap-ugg other downstream 66786 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 67654 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 77234 18794032 ~ 18806750 (-) False LOC113537624
trnae-cuc_6 other downstream 306689 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34546 other downstream 811075 18070987 ~ 18072909 (-) True G29279
trnap-ugg_1 other upstream 493430 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-cgg_1 other upstream 499431 19386442 ~ 19386513 (-) True trnap-cgg_1
XR_004580158.1 other upstream 2576850 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 2576850 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 2576850 21463861 ~ 21531428 (-) False raver2

Expression Profile