RNA id: TU35046


Basic Information

Item Value
RNA id TU35046
length 3007
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G29678
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18984062 ~ 19049735 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAAGttccacatttattttatatcagaCAATGTGTTAAGGTGTAGGCTACACAAACATTTTGACTCATAACTCAAACACTCACAAGACATATTGAACTACTGCCCATTTAAGATGGTACCAATGGGTTACAGCTGCATATTACACCATTCACAGCAATCATGTTTATATACAATGCAAAGTAGAACCGAGAAGatagaaaaatgtcagtgaatggAGTTTGTGCATATGATGAAAATGGAAGCACACAAAGAAATGCTGTTGATGAAAAGAGCctatcatttgtttgttttgtttttttttctcatggaGGCTGCTGTATGTAAGCTCTGTGATGGTGAATGACTGAGAATTATAATGTCGTGCCTGGCTGTCATTCAGTGACACAGGCTAGAAGGTGCAAGATTTCGTCCAACGCACTCTCAACAACATTCTCAAAGAAGTGCACAGACAAAAGACAactgcacacatgcacacgctgCTGAACAAAATGactaatatttcattttctttcacataTGTGCAGACACAAACGTAAAGCTTTAGAAATGGATCAGAGGATTCAGTTACAGTCTGGAACACTGGAGCACAGTTGTTTAGATATGTAGGCAGTTTAACAATCTTTCCATGCAAAACTGGACATACTTATTCAGATGATGTTCATTGCAAACAGCACAAAGAGCGTCTTTCTATATTGAACTGTGCAGTTAACAAGAACAGCATTATAAGTAGATCTGATAAGTCAACACTTTGCAATGTAAGTGGCTTCAGTGACTGGTCAAGTTCACATAAGCAAACAATTAAAGTCATAGTCATAAATTCATAGCCATTATACTTCAATACACATTTCTCCAGATGATAATATCACTCAGATAGCCTGAGTCTTGGCATTACTAAGCATGCTCTGGAGGTTGGCTGGCCTCAAGTCATGCTCCCATCTGCCCTAAGGAGAACTCAGAGAAATACCACATCGCAATCCATCTGGCTTAGTCCTAATAAACACGGATAGTTGGGATCTGTTCCAAGTCATTGTCATAGTAACAAAACCACTTTTGCCTGTGCAGACAAacacagcataaaaaaaaaactcaaaaaggtAAAGGTTaactttcatgaaaaaaaaagcaggtgaaCATGACCAATCACAACAGCGCAAATCAATGGTGTGTAACATTCCCGGAAATTATAACCATGACGAAGCTTCTGATAACCAGCACTTTCAGCAGCGCAGTGTGGATTTTCACTCGTACACAAACAGTGGCAATTCGCTAACAACACAGACACAAGCTGTTTGCTCTTCTCGTTAAACATTAAGCCAACAGTCATATCACACACTAACCAATAATGAGACTTTAGTTATTAACCCTACAGTATGAGTGCCATTAAAATGCATACTGCAGCCTCTAAGCTTGCAGTCTCCACTACAATATTTTGTAGTTTGTGGGAAATATAAGGTAACATGAAGCTTGAAAAAGGATGGTTTATGTGAacatcacaaaacacactgtacacGTTAGGTCCATTTCCATGTGCAGATTTGTTGATCTGTGTGAACAAGAAAGATCCCTGCTGAGAAATCCAGCTTGGTCTAAtcagctaccagctgccaaaacacaaaTGAGGTGGTTAAACTAGTAGATcatcatcttttattttattattatgtttcagCTTCcctatttcttaattaaaatgatctataaatgtttgagattttctaatggccttggttttgtgttttctttaaaaatttgtCTATGATGTTGCATTACTAGCAATAATTTGGAAATGGTTCCCTTTCTACTGGTACCATTTGACAAACATGGTCTACCACATGGGGCATCAGCTGATGGACCATGGTCCAGATGCAGAGCCAGCATGGTATTTCAGTGGACTGAACTGAGTACTTGAAAAAATTTTTACTGCAGCAGATTGTGGCTGTAGTTCAGGGCCTCCAGTTTTCTGAATATGATCCAGCTTGGCTTCCTCTGTTTCAGTTTatgcaatcacacacattcGCCCAAATTACTTTGCTGAAGGCAGCCCATTGGACCAGCGACCAGCTACAGGACTAAAACATTAGACCAGAAGGGGAGAATGTTCACACAAtttgatatttttcatttttatttaccctctctggtttGATTAGTGTGCTGACGACATGGCTTGTTGACAGTCAACAATGAagacagaatgtttaaagatgattgtacagagaagtatgtgtttatgcTTTGTGTCAAATGCAAAACTGATGGATGTATCTCTAATGTTCAGAGTCCACTGCACTAGTCAAAAGTGCAAACATGAAGCtccactatgaaacaaaacataaccactttgaatagtcttatttatagccatactGGTTgttgccattcagtcatgttagttgcttatccagaccCAAGCAAGGAAATTTTTGTAACTGGTCATTTACAAATTATTGTATTTGTTGAATAGCCCTGATCTACCAGCTTGACTAGCTGTGCCTGTGTTTTGGCTGCTGctagctggtcagaccaagctggatttttcagcaggtaTATGAGAAGTAGAAGTACCAGACCAATCACAAGATATGCTTACAAAATGACTTAGGTATAATAAGTGCACAGCATGAAAACTCAACCTCCAATATATCAAACGTGGGGCATGGTGAGAGGTTTGATTAATGAGCTGACATGATTTGGGAGACCTGAAGAATGAAAGCAGCAAATGAGAATGTAGAAACATGGGACGTGAGTAAAATCATATAATATACATCATTAAAAACCTGCAGTTTATGATTATACAGACTTTTGTCTTTAACTGATCTGGGTAATGATCCTTTCTCTGTTTCACAACTGGATATTTTGCAGAAGGCTCTTTCTCGCTTCTAACAACttataaatgaaacattcaTGTGAGCTACACATAGTAGCAGCCATCACAGCGTCACATCCTATTCCCTGTCCctctcctctgaaagtattcTGTGGGTCGAGGAGGCAGACATCTGATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34949 lncRNA downstream 88257 18890717 ~ 18895805 (-) True G29614
TU34947 lncRNA downstream 97051 18883984 ~ 18887011 (-) True G29612
TU34889 lncRNA downstream 177312 18794032 ~ 18806750 (-) False LOC113537624
XR_003403789.2 lncRNA downstream 177712 18794025 ~ 18806350 (-) False LOC113537624
TU35173 lncRNA upstream 209215 19258950 ~ 19259178 (-) True G29793
XR_004577309.1 lncRNA upstream 333579 19383314 ~ 19385251 (-) True LOC117596148
TU35304 lncRNA upstream 354673 19404408 ~ 19404621 (-) True G29905
TU35482 lncRNA upstream 488186 19537921 ~ 19540054 (-) True G30062
TU35476 lncRNA upstream 503443 19553178 ~ 19555762 (-) True G30059
XM_026916667.2 mRNA downstream 7125 18970308 ~ 18976937 (-) True zgc:103559
XM_034310948.1 mRNA downstream 7133 18970308 ~ 18976929 (-) False zgc:103559
XM_026916676.2 mRNA downstream 7441 18970308 ~ 18976621 (-) False zgc:103559
XM_034310739.1 mRNA downstream 14611 18964291 ~ 18969451 (-) True agxta
XM_034310741.1 mRNA downstream 14615 18964293 ~ 18969447 (-) False agxta
XM_026924570.2 mRNA upstream 322695 19372430 ~ 19376164 (-) True im:7152348
XM_026923318.2 mRNA upstream 494417 19544152 ~ 19552693 (-) False bcl6aa
XM_026923309.2 mRNA upstream 494417 19544152 ~ 19552693 (-) True bcl6aa
XM_026918863.2 mRNA upstream 906982 19956717 ~ 19983297 (-) False tbc1d23
XM_026918854.2 mRNA upstream 906982 19956717 ~ 19983297 (-) True tbc1d23
trnap-ugg other downstream 166864 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 167732 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 177312 18794032 ~ 18806750 (-) False LOC113537624
trnae-cuc_6 other downstream 406767 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34546 other downstream 911153 18070987 ~ 18072909 (-) True G29279
trnap-ugg_1 other upstream 330706 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-cgg_1 other upstream 336707 19386442 ~ 19386513 (-) True trnap-cgg_1
XR_004580158.1 other upstream 2414126 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 2414126 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 2414126 21463861 ~ 21531428 (-) False raver2

Expression Profile