RNA id: TU35304


Basic Information

Item Value
RNA id TU35304
length 214
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G29905
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19404408 ~ 19404621 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAATACTTAAGCCAGATTTAGTTAGGAAAGTAAAGCACACCAAGATAAAAACAGCAACACAGTGTCCTTCCGCAAAGATCTAGGGCAAAATAAAGTCTGTTTGGCCTTGCACTAGCTCCCACCTAGTGCAAGGGTAAACAGATTTCATTTTACCCTAGATCTTTGCAGAAGGACACTGTGGGTACTAACACTATCTTTTTTGTTATACTGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577309.1 lncRNA downstream 19157 19383314 ~ 19385251 (-) True LOC117596148
TU35173 lncRNA downstream 145230 19258950 ~ 19259178 (-) True G29793
TU35046 lncRNA downstream 354673 18984062 ~ 19049735 (-) True G29678
TU34949 lncRNA downstream 508603 18890717 ~ 18895805 (-) True G29614
TU34947 lncRNA downstream 517397 18883984 ~ 18887011 (-) True G29612
TU35482 lncRNA upstream 133300 19537921 ~ 19540054 (-) True G30062
TU35476 lncRNA upstream 148557 19553178 ~ 19555762 (-) True G30059
TU35494 lncRNA upstream 161662 19566283 ~ 19566511 (-) True G30070
TU35495 lncRNA upstream 161910 19566531 ~ 19566735 (-) True G30071
TU35496 lncRNA upstream 162130 19566751 ~ 19567000 (-) True G30072
XM_026924570.2 mRNA downstream 28244 19372430 ~ 19376164 (-) True im:7152348
XM_026916667.2 mRNA downstream 427471 18970308 ~ 18976937 (-) True zgc:103559
XM_034310948.1 mRNA downstream 427479 18970308 ~ 18976929 (-) False zgc:103559
XM_026916676.2 mRNA downstream 427787 18970308 ~ 18976621 (-) False zgc:103559
XM_034310741.1 mRNA downstream 434961 18964293 ~ 18969447 (-) False agxta
XM_026923318.2 mRNA upstream 139531 19544152 ~ 19552693 (-) False bcl6aa
XM_026923309.2 mRNA upstream 139531 19544152 ~ 19552693 (-) True bcl6aa
XM_026918863.2 mRNA upstream 552096 19956717 ~ 19983297 (-) False tbc1d23
XM_026918854.2 mRNA upstream 552096 19956717 ~ 19983297 (-) True tbc1d23
XM_026921581.2 mRNA upstream 581403 19986024 ~ 19999160 (-) True tomm70a
trnap-cgg_1 other downstream 17895 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 23896 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 587210 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 588078 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 597658 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 2059240 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 2059240 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 2059240 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 2059240 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 2059240 21463861 ~ 21531428 (-) False raver2

Expression Profile