RNA id: TU35476


Basic Information

Item Value
RNA id TU35476
length 2585
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G30059
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19553178 ~ 19555762 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGAGGCAATAAAATTCAATGTGCCAAATGTCTCACTTGAAATGTCCTTGATCTGAGACAGCGTATAAATTAAAGAGCTGAAATCAGAGTTACGGACAGAAATCCTTTTATTGCAGCTGCAAAGTTATATTTGCACAAAGATAATAAcaaattcatattaaattatatgCAAACAAGCACAAAATACAGAATTACATGAACACTTTGTGGTTTGTGACAATCAGGGAAAGAAGCTGTCAGTGGTCAAAGCCTTTTCAGTACTGCAAAAGTAGAAAGCCTGCTTTGTAAATTACCCGCAGACTGCacattatatgaaaataacctTTACCAGTACACTGTGTATGCGTACACAAATACTTGCAAACCTACAGGCAAAAATGACAGAACTGTTCATATCAGAAGGTGCTGCTCTGCCATGTCAGCAACAGGTCTCAGGTTGAAAAATATGCAACCCTGcccaatcagcacacacactcgctgtgcTGTCGAAGCATGCAGGCGTATGGCTTGTTGTTTTCCCACAATATCACACTCTTCAAATTGAATAGAGCGAAATATTCTACTCAGACTGAGTCAACTTACGTCTATTACATTAATTAGGTAAAATTAGTTACATAGATCAGCCACTTCTGATAAAGAAACACAGATAAAATAAGAACAAGTAAACTAGCTGCTGTGCTGCAGAATCTCACCCAACTCGGTCACCAAGCTAAACACGCTCTATTGTGGGTTAAAGGCCAGGCCACGTTTATCTAGAACATTTTGTGCCTTAACATTGTTTAGACAATGACATTATTCCAATTCAGTGATGCATGTACAATGTGGCTGGcaataacaaaaatgtagaattattttctttaaaaacaataataagcTCAAGGAATCTCAGTTATGCATCAACACCTGGAAACAATAAGACACTCATATCATCCATGACACTAATACATATAAGAATTGTGtgcatttaatataatattaatgactttaatattcaattataattacacaatactaatactactactactactactaataataataataataacaaaaattagtagtagtagtagtattgttgttgttgttattgttgttattattattttggcacTCTATGTGAAATAACTGAATCTGTCTGTAATGTAACTGCTTGTAACCGTGTTACAGATAAAACCTGATTGCCCTTTAACCCACAGGACAGCGTGTTTAGTTTGGACACACAGTTAGGTGACTTTCTCCAACACAGCAGCGAGTTCACCTGTTCTTattttatctgtgttttttgAACTTGTCCACGCAACTTGTCCATACATCTCCTCCATCACTAAGTGCAAACAAGTGGAATTACTTAATTCTCAAATTAAAAGCCCAATATATTTTAGTGCCcaaaaaattaagttaaaagttaaaaataaaagttatccTGCATGTGTTATCAGCTGCTGTCGctcacacacgtatacacacattcacaccaccCTATATTCTTCTCAAGCTAACCTGTCACTACTGCATGCTCAGTGCAGGGTGTGAGAGCAAGTATTATTGCCTTTTAGAGTAAAATCAGAGCAAAATACCTGCAGATTTTGCCTCTGTGTTTGGTGATTCTCTTAATGACACGTCTACCGTGTCACTTTAGAAGTCTGGTACTAGCAacactgtactttttattttttttagttacattcAGTATGTGAGTcgatgtatgtgtgtatgttatatacacatattttgaatatatgaatatatatattcaatatatatacatatatattcaatatattttcttatatataatataatacaatatataatatattgctatatacttatatatgtatgtattatatataaacacaagGCACTACTGCTGCTTACTTTGGTCAAAAGCATGAAAAGGTTTAGACATCATTTGAACTAATATTAAAGAGTTAAACCAACACTTAAACCTGCTTACTTGGTGAATAACAATACATttaggttttttcttttcagtgataTAGCATACACCTGGATATTACACAGCTTAATAACTTAATTCACAGTGTTAATGTTGAAATAAGTTGCACTGCAGTTGTATGCAGCTGGAAACACTGTAATGAAACCCAGCAGGAGTAAAACTAATGCACTTTGTTGTGCAATGCACGTCTACTGGAACTACTCACAACtctaaatgttcttaaatgctattaaaacacacactgaacgtGTACACCAGCATATTAACCCGTTACTTACAGCAATGCCATGCACGTTTCTGACACATATAGCTCGACAAGGACAAAAGCAGGCAAGAGACACCACACGGAATGTACATTATAAAATCCAAGacgtgagggaaaaaaatatcagtttttCAAATATATAATGCCTTTAGGCTTAATCCTGCTCAaaccaaaaacataaataaacccCTGCTCATTGTTTAGCAGCAGTCCGCACCGAAGAGGAACGAAAAGTGGAACGTatttctaaaaaagaaaaaaagaaaaaaaaaactaaatatgaGCAGAGCGACAGGCTAAAACAGCTCGGTCCGTGTGAATAGGAACTCCGTGTACACTCGGTATAGTGTATGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35482 lncRNA downstream 13124 19537921 ~ 19540054 (-) True G30062
TU35304 lncRNA downstream 148557 19404408 ~ 19404621 (-) True G29905
XR_004577309.1 lncRNA downstream 167927 19383314 ~ 19385251 (-) True LOC117596148
TU35173 lncRNA downstream 294000 19258950 ~ 19259178 (-) True G29793
TU35046 lncRNA downstream 503443 18984062 ~ 19049735 (-) True G29678
TU35494 lncRNA upstream 10521 19566283 ~ 19566511 (-) True G30070
TU35495 lncRNA upstream 10769 19566531 ~ 19566735 (-) True G30071
TU35496 lncRNA upstream 10989 19566751 ~ 19567000 (-) True G30072
TU35509 lncRNA upstream 27901 19583663 ~ 19584005 (-) True G30085
TU35516 lncRNA upstream 43736 19599498 ~ 19613602 (-) True G30088
XM_026923318.2 mRNA downstream 485 19544152 ~ 19552693 (-) False bcl6aa
XM_026923309.2 mRNA downstream 485 19544152 ~ 19552693 (-) True bcl6aa
XM_026924570.2 mRNA downstream 177014 19372430 ~ 19376164 (-) True im:7152348
XM_026916667.2 mRNA downstream 576241 18970308 ~ 18976937 (-) True zgc:103559
XM_034310948.1 mRNA downstream 576249 18970308 ~ 18976929 (-) False zgc:103559
XM_026918863.2 mRNA upstream 400955 19956717 ~ 19983297 (-) False tbc1d23
XM_026918854.2 mRNA upstream 400955 19956717 ~ 19983297 (-) True tbc1d23
XM_026921581.2 mRNA upstream 430262 19986024 ~ 19999160 (-) True tomm70a
XM_026912656.2 mRNA upstream 447597 20003359 ~ 20014094 (-) True glmnb
XM_034314524.1 mRNA upstream 470092 20025854 ~ 20032781 (-) True gfi1ab
trnap-cgg_1 other downstream 166665 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 172666 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 735980 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 736848 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 746428 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 1908099 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 1908099 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 1908099 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 1908099 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 1908099 21463861 ~ 21531428 (-) False raver2

Expression Profile