RNA id: TU35516


Basic Information

Item Value
RNA id TU35516
length 1895
lncRNA type inter_gene
GC content 0.66
exon number 2
gene id G30088
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19599498 ~ 19613602 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atttagatgagtaATTGCACTTTTTCTTGAGTAAAGAATGTGGGTACTTTTAACACTTCTGATTActacacagaaatacagaattACACTGATGACAGAAAAATGATTAGACACACTGAAGTACAATGTTCCATTCAGGTAAATAACTCCACGGCTCATATAGGGAAGGGGTGGACAAAGCAGCAGCCCGGGCACCCGGGACAAGCAGATCAGCCCCAGGCTGTGCTATTAGTCTTTAATTCATAGTTGCTTGGTGGACAAATAGGTTccacaaccagaaaaaaaaatattccttattagttttcacaaatataaaggttttcatttggtatgtatgTTTAAAGTTAAAGTAATGCTAAGGGAATTACAAAGTACAGctcaaagctaaaaaaaaaataatgcttctGCTAGCACAAAACTTGGTCATCTAACTGTTAAGATGATAGTTGGACTTGAACATCTTTTAtatgtcatgctagaacagaaCACCGCAGCTTACAGCCAAAGCATTCACAACAAGCACAATGTTCTACTTGATCATACACTCATTTGTTTCCGTTGCCtgtattaatatacatattgtcagctaccactttttagcctagtcattCTTCCAGtaaaccaaaacatgggactgggcagcagaCTGGAGCTTTTAGttgcctggtgggctagctaataaattcaTGATTGCAATATTTACCGAAGTCTGACTGCTGCTCTTTTTGATGTGCTCTCTGTCTTAGACCAGACACGTGAAAACAGGGCAGGCAATCCAGATGGCCAACTTAAACCATCAATAATAAACCACATCTTTGTATATTTAATGTCTTCAAATTgcccagttaaaaaaaaaaactcttccaGATGAAGGTATGTAGCAAAGAATCCACATGCCATGATCCATTAGTGGCCACTTGGACCTTTACTTCTGCTTTTCAATAAGAGTACCACTGATCAAAGTATCCAACAGATGCattaacacaaatacacatgtaTACGGTTAAAAAGGATGTACACAAAAACAGCAAGTAACAGCAGACCCATCACAGGATCTACAAAAAAACAGTGCCATGTGCTGGGTTCTGAGGAGCAAATGAAGAAAAGGGAACACCATGTATGGTATTGCAGAGATGGAAATAGAAAGAGGAGGAAGTGGATGcatatgcattaaaaatgatgtgaattaaaaatgcatacaaTAAAGGCACAACAGACATAAGAGGATGGCAGTCATTTATATGAACTACTTATTTACTAAATACAGAGCTCTATGCCAACCATATTTATAGTATAACCAGTTTTCTTTGACACCTCCAGACCTAAAGCACAAACGTGTTTGACTGACAGTatgtaaaaacataaatgttaagAGACTatgagaaattaattaaatacagcAATCAAAGGTGTCACTGGAAAAGTATACTTGTAGTAAATAGAAGGCTGGCATATTTCCTATTACAgtgtattcagttttttttaactcagataaaatgttttaatagagaaagaaagaaatgaaaagcttATGAATAGTATCAAAATGCAGCAACAAACCTTTTTAAACATCAATCAGACCTGACAATGTAGAAGGCTATTAAACAGAAACTACACAAAGACAATTGCCCTATTTTAGCATTAGTAAGTGATAGAAATGTCCTGGTCAACCTGATAATGGTCAGAAATGGCACATAATTGCTCCCCGCTGTATACCATGATGCACTGCTGTTCTAAAGCAGTCAAGGGAGGCAATCCACTCCAGCTAGTCAATCATACATGCCCAAACACATCAGCAAGACTGCTATCTCCATACCATATCACAGCACAATGAATGAAACCTGTCCCAGCTTACAGCCCAGCACCCAAACACCTTCCTTCATTagcagagagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35509 lncRNA downstream 15493 19583663 ~ 19584005 (-) True G30085
TU35496 lncRNA downstream 32498 19566751 ~ 19567000 (-) True G30072
TU35495 lncRNA downstream 32763 19566531 ~ 19566735 (-) True G30071
TU35494 lncRNA downstream 32987 19566283 ~ 19566511 (-) True G30070
TU35476 lncRNA downstream 43736 19553178 ~ 19555762 (-) True G30059
TU35691 lncRNA upstream 271866 19885468 ~ 19886738 (-) True G30236
TU35701 lncRNA upstream 300051 19913653 ~ 19913951 (-) True G30246
TU35712 lncRNA upstream 310161 19923763 ~ 19923979 (-) True G30255
TU35735 lncRNA upstream 371073 19984675 ~ 19985919 (-) True G30270
TU35741 lncRNA upstream 398823 20012425 ~ 20014005 (-) False glmnb
XM_026923318.2 mRNA downstream 46805 19544152 ~ 19552693 (-) False bcl6aa
XM_026923309.2 mRNA downstream 46805 19544152 ~ 19552693 (-) True bcl6aa
XM_026924570.2 mRNA downstream 223334 19372430 ~ 19376164 (-) True im:7152348
XM_034310948.1 mRNA downstream 622569 18970308 ~ 18976929 (-) False zgc:103559
XM_026918863.2 mRNA upstream 343115 19956717 ~ 19983297 (-) False tbc1d23
XM_026918854.2 mRNA upstream 343115 19956717 ~ 19983297 (-) True tbc1d23
XM_026921581.2 mRNA upstream 372422 19986024 ~ 19999160 (-) True tomm70a
XM_026912656.2 mRNA upstream 389757 20003359 ~ 20014094 (-) True glmnb
XM_034314524.1 mRNA upstream 412252 20025854 ~ 20032781 (-) True gfi1ab
trnap-cgg_1 other downstream 212985 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 218986 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 782300 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 783168 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 792748 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 1850259 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 1850259 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 1850259 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 1850259 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 1850259 21463861 ~ 21531428 (-) False raver2

Expression Profile