RNA id: TU35691


Basic Information

Item Value
RNA id TU35691
length 1271
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G30236
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19885468 ~ 19886738 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCCTTGGAGAcatccaaacacacagcaacactatTAAACAGATGACGTAAACATGCttacaaaaaatataagaaaaaaagaaacaacaaagcaGAAGGTGAGTTCATTACAATGGCTGTTTACACAAGACAAAAAGATTAGATCACCCGGATCCCATCTTCCTATCCTATTTTTCCTCACATCCCTTTTTGGCTGAAGTCAGTACCCATGAGCAAGTCAAACATAAAAAATCTGTGCAGCTAAAAGGATAGTTTATCAACTAATGCAAACATGGGTAAAAGAATAAtggacagctgtgtgtgaaatccaGAAGGTAACATGGTACGTACTTCTCACCTCATTATTAGCCACATGCCTTTTTGGGGAAAATTTTAGGCAATGACATCAAGTGAAGCACCattttattgtgaaatatttccGTATCACACCCCAAGCATGCTGTTGTGAAATTCAGCTGCATACCTGGAACACGGTCACTCCTTGTTTTTTAGGCCCACCTCTGTTTTAACAACTAAGCTGGCAGTTCACCCAGTGCtttctttcaaagataaaaaaaaaaacctttctgtgCTTAAGTAGAACTGCAAATGCTCCTCCAGGGCACAGCAATTCCTGAGCTTGGGTAATGAAACGCTTCCAAGCTCCACCAAGatccacattaacacactgacttctgtaacacacacatttaagaaacaaaacaaatacacagtCCTCTTCcctacagctttttttttttagagtgtgatttatggaaggattaaaacaaacttttggAATGGATATTTTGGAATAAGATTTAAAACAGAGGTTCAGAGTCGCAGAAATCTCTATAGTGCAGTTTTCTCCACTCTAACACAGCTGACTTAACAttcagtcagctccagaatgaCCCATCACTGGGAAAGACTGCCCAAAAAAATGCCTCACAGctccccggtttgatcctgagctcaggttactgtccgTGTGGAGTTTTCCACgttctccttgtgtccatgtgtgtttcctccgggttcttcagtttcctcccacctcccaaaacatgtgAGCACGTGGAGTGTTGACTCTACATTTCCTCTAGGTGTGGGTGGAAAACGAgtgggaaaatgtgtgtgtatgatggactggcatccaatccagggtgtgttcctgcctcgcccagtgtttctgggataggaCATGGATCCACTAAGAGCCTGAccaaagcagttactgaagctgaatgaattagtattaaaaaaaaaaaaaaaaaaaaaaaaaggtctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35516 lncRNA downstream 271866 19599498 ~ 19613602 (-) True G30088
TU35509 lncRNA downstream 301463 19583663 ~ 19584005 (-) True G30085
TU35496 lncRNA downstream 318468 19566751 ~ 19567000 (-) True G30072
TU35495 lncRNA downstream 318733 19566531 ~ 19566735 (-) True G30071
TU35494 lncRNA downstream 318957 19566283 ~ 19566511 (-) True G30070
TU35701 lncRNA upstream 26915 19913653 ~ 19913951 (-) True G30246
TU35712 lncRNA upstream 37025 19923763 ~ 19923979 (-) True G30255
TU35735 lncRNA upstream 97937 19984675 ~ 19985919 (-) True G30270
TU35741 lncRNA upstream 125687 20012425 ~ 20014005 (-) False glmnb
TU35799 lncRNA upstream 217514 20104252 ~ 20112518 (-) True G30320
XM_026923318.2 mRNA downstream 332775 19544152 ~ 19552693 (-) False bcl6aa
XM_026923309.2 mRNA downstream 332775 19544152 ~ 19552693 (-) True bcl6aa
XM_026924570.2 mRNA downstream 509304 19372430 ~ 19376164 (-) True im:7152348
XM_034310948.1 mRNA downstream 908539 18970308 ~ 18976929 (-) False zgc:103559
XM_026918863.2 mRNA upstream 69979 19956717 ~ 19983297 (-) False tbc1d23
XM_026918854.2 mRNA upstream 69979 19956717 ~ 19983297 (-) True tbc1d23
XM_026921581.2 mRNA upstream 99286 19986024 ~ 19999160 (-) True tomm70a
XM_026912656.2 mRNA upstream 116621 20003359 ~ 20014094 (-) True glmnb
XM_034314524.1 mRNA upstream 139116 20025854 ~ 20032781 (-) True gfi1ab
trnap-cgg_1 other downstream 498955 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 504956 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 1068270 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 1069138 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 1078718 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 1577123 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 1577123 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 1577123 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 1577123 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 1577123 21463861 ~ 21531428 (-) False raver2

Expression Profile