RNA id: TU35735


Basic Information

Item Value
RNA id TU35735
length 1245
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G30270
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19984675 ~ 19985919 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgtgcgcacacacatcaaaacagtgcaataagtaaggaatatgtacagcaaatagtgcaaaactAGGCATGTACAGCAAACAATGCcaacaaatatgaacaaatgaGAGATTAAAgcagaaattaaatgttaataaattaataaatattgagGTAGAAGTCCTTTGTTATTACACAATCAACCCTGAATCTTATGTGCTGAGAAATATTAGCTAATTAAGTTCAGTTCTTTGATGGCATGTGGATAAAAACTGTTCAAGAATCTGGAAGTGCTTATCGATAGCGTCTTCCAGAGGGTAGCAGAGTGAAAAGGTGATTACCGGGATGATTAATCAGTGTCAGGTGGCTTCTCTGTGTTGATTTCTTTGTGAAAAATCTTCTCTGATGTGCAAATTGCTGAACTCTACAACTTTTCTCAAGCTGGATGGGAAATGTACACTTATCAGCATCTGAAGGGCTTACACAGATTTCCTTAGACCTGCAAAatatgtatttcagaaacataCATATTGATTTATATTTGATTACCACCTTATTGCATTTTAGAGTTGTGATGTTACAGTGTTAAGGAGTAACAGAGATACAAGCACCTATGCTACAAGTTTTAGTTTCTAGTTTTACCTTTAAAGCAATTCAACTGGTCTGGAGTCATTGctgttaatatatttatgtgaCTATGGATAGGTTGTTAAATAGCAGAGACCTGATATTCCACATTCAAAGGAAAAACCCCATGATAATCGTCATCTCTCTGCTGTGCATATTAAAATGTTGCTGAAGTTCTAGTGGGTGGGGGAGTCAAATGCTCAATGGTGGTAGCTCAATTTCTGTTCTTTGGATGATATTTTTGGGGACTGGGGAATATGTAATGATTTCTGCCTGGTTCATAAGTACATACTTGCATTCAAAAGAGGGAACATAAAAGATACCTCTGCATGTAAGTCTTAGCAGATTTGCTTGTGTTGTTGAGTTTGCCTGCTTTGTGATAAGCCTTGCTGAACAGTGGCATTAAACTGCCACACAAGCCAGAagttggaaagaaaaaaaaatcattccagACTGCTGCATGTTTGCAAATCATTTGAGTGACTCCTATTTTAActataaatgctttaaatgaacACATTGCATTAAGGTGCTGCGCCCAACTCGTAAAGTCCTGAATGAAAACGTACTGCTGTACACAGGCCGTGCCCCTCGAGGTGAAATTGATCACTTGGAAACAGATGTTAAAAGAAGTGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35712 lncRNA downstream 60696 19923763 ~ 19923979 (-) True G30255
TU35701 lncRNA downstream 70724 19913653 ~ 19913951 (-) True G30246
TU35691 lncRNA downstream 97937 19885468 ~ 19886738 (-) True G30236
TU35516 lncRNA downstream 371073 19599498 ~ 19613602 (-) True G30088
TU35509 lncRNA downstream 400670 19583663 ~ 19584005 (-) True G30085
TU35741 lncRNA upstream 26506 20012425 ~ 20014005 (-) False glmnb
TU35799 lncRNA upstream 118333 20104252 ~ 20112518 (-) True G30320
XR_004579569.1 lncRNA upstream 211301 20197220 ~ 20199516 (-) True LOC117599142
TU35898 lncRNA upstream 213614 20199533 ~ 20207732 (-) True G30412
TU35910 lncRNA upstream 260686 20246605 ~ 20246871 (-) True G30421
XM_026918863.2 mRNA downstream 1378 19956717 ~ 19983297 (-) False tbc1d23
XM_026918854.2 mRNA downstream 1378 19956717 ~ 19983297 (-) True tbc1d23
XM_026923318.2 mRNA downstream 431982 19544152 ~ 19552693 (-) False bcl6aa
XM_026923309.2 mRNA downstream 431982 19544152 ~ 19552693 (-) True bcl6aa
XM_026924570.2 mRNA downstream 608511 19372430 ~ 19376164 (-) True im:7152348
XM_026921581.2 mRNA upstream 105 19986024 ~ 19999160 (-) True tomm70a
XM_026912656.2 mRNA upstream 17440 20003359 ~ 20014094 (-) True glmnb
XM_034314524.1 mRNA upstream 39935 20025854 ~ 20032781 (-) True gfi1ab
XM_026921238.2 mRNA upstream 53031 20038950 ~ 20101162 (-) True evi5b
XM_034313306.1 mRNA upstream 53734 20039653 ~ 20101160 (-) False evi5b
trnap-cgg_1 other downstream 598162 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 604163 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 1167477 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 1168345 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 1177925 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 1477942 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 1477942 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 1477942 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 1477942 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 1477942 21463861 ~ 21531428 (-) False raver2

Expression Profile