RNA id: XM_026917435.2


Basic Information

Item Value
RNA id XM_026917435.2
length 4040
RNA type mRNA
GC content 0.44
exon number 14
gene id pex5la
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20359722 ~ 20429325 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTGGGAAAGGAGGATGAGCCAGGAGATTGAATAAAGCTCGCAAGCGTTAATAGCAGCTACTAGAGGAGAGCAGCGGGAGGGGAAAGAGAGGCAATGCTTCTGCCGCAAACACGCACGCATCGGGACAGCTGAGCTCGAGTTGGATAAGAGACTAAAGAGCCGGACTGAAGCTCTTCTTCACCCTTTCCTGCGAAGTGCTGCCTACAAGAAACATCTGAACATCTCACACTGACGTCCTGCACTGTGTATTAGCACTTCTTTAGAGGTGTTATGTTCCATTAGTTGGGGAACACTTGGCTTTTCCCCAGGCGACTCATGCTGTCTTTGGCGTTTATCTGACTTGCACTGATAGTCGGGAGATCCTCGAACTGATCACTCTCAGCTCAATATGTACCAGGGGCACCTGCAGctggtGAGTGAACAACAAGAGAGCCGTCCCTTGCTGAGCCCCTCCATCGACGACTTCTTGTGCGAGACCAAGTGTGATGGAGCTGCCCGCCCTGTGACCTCCAACACAGCAGTGCTGTCCTCTTCTCTGGACCTGCTAGACCTGAGTGAGCCTGGTGAGAGGAGGAAcagtaaagacagaaagagtTCCATGTCCACCAAGAGCACGCCTCATAGAAAGAAAGCAGATGAAACTGAGCTGATACAAGTGGATGTTGAACAGAACAAACCCTGCTCTCGTACACCTGTGAAAGATTCTCTCGATTCAGCAGGTGTTCCTTCACCGCTGGAGAAATGGGAGGAACTCAATCCTCAACCAGAGAGAACCGGTAGCAGGAAATGGAAGCTAGACAAAAGAAGGTCGTCCAAAAATTCTGGAGATTTTGCTTGGTCTACTGACAGCAAAACGCAACCCGATACAGCCGCCAAGAACTCATTAGAAATAAATTACAAGGCTGAAGCAGAGACATCGCCTTCCACTCAACTCAACAAGCAGTATATTAGTGGAAGACATggcCGACTGAGCAAAGATCAGAGGTGGGGTGGAGGGCTCCTATCCAGAAACCAGTCCCTCGAGGAGGAGTTTGAGCGTGCCAAAGCAGCAGTGGAATCAGACACTGAGTTCTGGGACAAGATGCAGGCTGAGTGGGAAGAACTGGCTCGCAGAAACTGGCTTACAGAGAATGAGCAGGCCCAGATTCCTTCTACGGTTTCTCCTCATGAAAAGGGATATTACTTCCACACAGACAATCCATATAAAGACTGGCCAAATGCGTTTGAGGAGGGGCTGAGGAAGGCCAGAGAGGGAGATCTGCCAAACGCTGTTCTCCTCCTGGAGGCTGCTATCTTGCAGGACCCTCAAGACTCAGAGGCTTGGCAAGTCCTGGGGACCACACAGgcagagaatgagaatgagcaGGCAGCGATTGTCTCCCTCCAGAGGTGTCTGGAGCTCCACCCCAACAACCTCCAGGCCCTCATGGCATTGGCAGTGAGCCTGACCAACACGGGCATGAAGCAGGAAGCATGTGAGGCACTACTGGGCTGGCTGAGACATAACCCCAAATATAAACACCTCCTGAAGAACCGCAATAACCTGCAGGGCTCACCAAACTCACGCCGCCTCTCCTACTCCGCACCCATGGCATGCTCTCTGCTGCCTGAGCTGAAGGAGCTGTTCTTGGAAGCGGCCCAACAGAACCCAGACACGATTGACCCGGACTTGCAGACAGGCCTGGGTGTGCTTTATAACCTTAGCTCTGAGTTCAACAAGGCTGTAGATGCCTTCAATGCTGCGCTGTCTGTCCGGCCAGAGGACTACTTGCTGTGGAATCGTCTCGGGGCAACGCTAGCTAATGGAGACCGCAGCGAGGAGGCAGTGGAAGCGTACACCCGGGCTCTGGAGCTCCAGCCTGGTTTCATACGCTCTCGCTACAACCTGGGCATCAGCTGCATCAACCTGGGTGCACACAGGGAAGCCGCCAGCAACTTCCTGACAGCATTAAGCCTGCAGAGGAAGAGCAGGAGTCGGCAGCTCTCCCACCAGGTCATGTCTGGAAACATCTGGGCAGCATTGAGGATAGCACTCTCAATGATGGACCAGCCTGAGCTCTTCCAGGCGGCAAACATCGGGGACCTGGACTTACTCATGAGGGCCTTCAACCTGGACATGTGAACTggcaaatatttttgaatgagTATAAGCCAAGAACCCAAAGTCCTTCAAATGGAGGAAGCAGTAAACCATTTTATTGaagagatttttcatttttttcgcAGAGCACCTTTACATTCCTGAGAACTGCATGGCAGTATATGATTTCAGAGAAGAGCACAATGCCTGGAAGATTGTAGAAGTATGCCTTAGAGAAAATACTAGTTAGTGACGTCTTGCTGGGTGGAGGAGGGATGTGCTGGAAgaactatgaaaaaaaaagtctgtaactCAGAACGGTTACATTCCTGTGTCTCTTGTATGATGAAACAGATGCAGATCTGGATTGTCAGATAGATCAAAGCAATAGTTTAAAATTGTTCAGTGCTACAACCCACAGGTCctattttagctttttcttaaatgtagtactagaaaaaaaaaacttttctgttgTTTGCTGTAACTTTGCTGCAGACCAGACTATAAAGCCTTATTTATAATGCATGACAAACAATTAGTAATTTCAGAGACCTTATGGGGATGATAGCAGATGAGATAGTTTGCCTCATGATGGCTTGTCGTTTACAAAGAAtcaagaagtttttttttttaatcactatcAAAGCTTTCCTTTTGCATCTTTACTATATCTCTGAATGCCATATGTGACTGTCTTATGAAAGACCCACAAAATATGCAGGTGACTGTCCTCCACAGTTCCACTTGACATAAAGTTATGCATTATTGCATTGTGTCTTAAAGCTCATTTAAGACTTTCGTTGCATGTGATGTGAAGTTGAAAGTGTCAAAAACTTTAgggtaaaataatgaatgatgcATAACTTGAGATCAtggtttaatttattgtttgtaaAGATGGAGGCAGATTACCTAAAAAAATGAGTGTTGTCACTTTTTATCAACTTACTAAGGAAACACCATGGAAAAACATGGTAGCTAGTTAAATATGCACTTACTTTGTTTCTTCTCAGTATATCTAGCTACAACTAGTCCACATACACAGGACAACACAAAACAGCATGGATGATAAATGAGAAGGTTTGCATATCCATCTTTACAGGGCACAGATTTTCTGCTTGAATTTAGCATGAGTGACCAAATCTATTTATTTTGATGATCATTTTTACATTAAGCTCTTTATGTCTTGCTTATTTAAATGACTGTAAATTCTCTGTGACAGGCCTGTGCTTTCTAGCTGATTGCTTCCTACTGTAAATTATCTAATTGATATGTTGGTAGAGCCCGAGGAATGTCTCCCCTTTTTTTTAGAACTCTGTACAATCTCAGGTGAGATGATCTAGATGACCTTATACTCTAGAACTCCTTATTTATGAGGACTGCATGCTGAATGCACTTATTTTTGAATGCGGTAGCTTTATTTATATGCATGAAATTGTCATGCCTCTTTTATTCTATCTCTCATTTCTATGACATATACATAATCCTGATTTTGCATTTCAGTACATATTGACCTTTATGTACATTTAACTTAAAGCAGATTATATAATAGTTACCAGTTTTGCAATGCAACTAGTAATCTAgatgaaatataatttattgtatACCTGTTCATACTATTCTCACAAAAGAGACCAGATTTACTGAAGCCTGTAGCGCATGTAAAACATAGTAGCTCGAACAAACCAAGTGTGCAATCAGTGATCTGACATGAATCCGTCCTTACTACAATGTTACCAAAACTATACATGCTGCATCTCCTAATAATATGTCACAGGCTTCATTAAGTCTGGTGcaacatatttaaacataacaGAATATATCAACTATTGAACAAACATATGAAAAtgatcttttaaaataaaataaaatgtaatttacacTGTGTAGTTGTCCTCTTTTATAATCTCAGTTGTTTTACATTAATCGTCAATAGTTAATGCATATTTCTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35920 lncRNA downstream 44211 20314838 ~ 20315511 (-) True G30428
TU35912 lncRNA downstream 111213 20248166 ~ 20248509 (-) True G30423
TU35911 lncRNA downstream 112385 20247111 ~ 20247337 (-) True G30422
TU35910 lncRNA downstream 112851 20246605 ~ 20246871 (-) True G30421
TU35898 lncRNA downstream 151990 20199533 ~ 20207732 (-) True G30412
TU36047 lncRNA upstream 50787 20480112 ~ 20480726 (-) True G30550
TU36048 lncRNA upstream 51855 20481180 ~ 20482701 (-) True G30551
TU36049 lncRNA upstream 63159 20492484 ~ 20495517 (-) True G30552
TU36058 lncRNA upstream 77827 20507152 ~ 20507352 (-) True G30561
TU36445 lncRNA upstream 78057 20507382 ~ 20518947 (-) False G30879
XM_026927143.2 mRNA downstream 31263 20324858 ~ 20328459 (-) True mrpl47
XM_026943439.2 mRNA downstream 49496 20265313 ~ 20310226 (-) True tmem131
XM_026926703.2 mRNA downstream 101169 20250115 ~ 20258553 (-) False LOC113534100
XM_034311024.1 mRNA downstream 101169 20250115 ~ 20258553 (-) True LOC113534100
XM_026923886.2 mRNA downstream 113714 20207755 ~ 20246008 (-) False nme7
XM_034311575.1 mRNA upstream 254222 20683547 ~ 20814820 (-) False lrrc7
XM_034311566.1 mRNA upstream 254222 20683547 ~ 20814820 (-) True lrrc7
XM_026921598.2 mRNA upstream 254222 20683547 ~ 20770411 (-) False lrrc7
XM_026921363.2 mRNA upstream 254222 20683547 ~ 20770411 (-) False lrrc7
XM_026921445.2 mRNA upstream 254222 20683547 ~ 20770411 (-) False lrrc7
trnap-cgg_1 other downstream 973209 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 979210 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 1542524 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 1543392 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 1552972 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 1034536 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 1034536 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 1034536 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 1034536 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 1034536 21463861 ~ 21531428 (-) False raver2

Expression Profile