RNA id: TU36445


Basic Information

Item Value
RNA id TU36445
length 686
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G30879
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20507382 ~ 20548637 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctcaaataagcactctttgcaaccatggtgagcagaaaggcatctcagaacgcacaacacatcaaaccttgaggtggatgtgctacaacatggggttccacttctgtcagccatgaaaggaaatctgaggctaccatgggcacagattcactgaaactagacagttaaagagtggaaaaagaccaggtgatttttttttcttttttttctttttttttttttttttacaatttcagTTGAGATAGCATGACATGGTCAGACCACAAGTAAAATCTATTTCATAGAGAGGCTTCAACTTCAAAGCACCGTTTGGTAACCAGAGATCACTGTCAAAAATGGCTGACCTCCTAAcaatatgtacaaaaatataaaatgtaaataaaaatacaaacaaattctCCTTTTAAAGTATTTTGTAAGAAGGTAGAGCTTTGAAGTCTTGGTTGTTTCTACAAAATTTGCAGTTAGGTGTGTGTACACAGATGCTGAACTCTACTTGATGATGACCACATTTCTGTCTTCCCCCAGAGGACGAGTTAAGGAGAGGAGGGTTGGGAAGATGTTCAGCAGGACGTCCTCTTTTAATTGTCCGTTCATGGCAAGGCAGCCAAGCAGAACTGAACAACAAACCTTCActtataaacaattaaaaaagaaaggcatAAAATTTCAGATTTGTACATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36058 lncRNA downstream 30 20507152 ~ 20507352 (-) True G30561
TU36049 lncRNA downstream 11865 20492484 ~ 20495517 (-) True G30552
TU36048 lncRNA downstream 24681 20481180 ~ 20482701 (-) True G30551
TU36047 lncRNA downstream 26656 20480112 ~ 20480726 (-) True G30550
TU36004 lncRNA downstream 102974 20404209 ~ 20404408 (-) True G30507
TU36466 lncRNA upstream 57014 20575961 ~ 20656520 (-) False G30899
TU36467 lncRNA upstream 136405 20655352 ~ 20657383 (-) True G30899
TU36669 lncRNA upstream 441225 20960172 ~ 20960391 (-) True G31070
TU36702 lncRNA upstream 543947 21062894 ~ 21065738 (-) True G31094
TU36880 lncRNA upstream 762417 21281364 ~ 21283225 (-) False lepr
XM_026917435.2 mRNA downstream 78057 20359722 ~ 20429325 (-) False pex5la
XM_026917418.2 mRNA downstream 78057 20359722 ~ 20429325 (-) False pex5la
XM_026917428.2 mRNA downstream 78057 20359722 ~ 20429325 (-) False pex5la
XM_026917411.2 mRNA downstream 78057 20359722 ~ 20429325 (-) True pex5la
XM_026927143.2 mRNA downstream 178923 20324858 ~ 20328459 (-) True mrpl47
XM_034311575.1 mRNA upstream 164600 20683547 ~ 20814820 (-) False lrrc7
XM_034311566.1 mRNA upstream 164600 20683547 ~ 20814820 (-) True lrrc7
XM_026921598.2 mRNA upstream 164600 20683547 ~ 20770411 (-) False lrrc7
XM_026921363.2 mRNA upstream 164600 20683547 ~ 20770411 (-) False lrrc7
XM_026921445.2 mRNA upstream 164600 20683547 ~ 20770411 (-) False lrrc7
trnap-cgg_1 other downstream 1120869 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 1126870 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 1690184 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 1691052 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 1700632 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 944914 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 944914 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 944914 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 944914 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 944914 21463861 ~ 21531428 (-) False raver2

Expression Profile