RNA id: TU37144


Basic Information

Item Value
RNA id TU37144
length 355
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G31492
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21615321 ~ 21615675 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAATATTCAGGTCCACTGGGGAGGAACAGTTTTAAGCTtgtttcaggggctcaaagccACAGCATGACTGCTTTTTGATGTTGGGTGTTAGTATTTAATCCTGCCATGACAAAGACAACTAACTTTAATGACTGGTGATCAGAGGAACTGCCTGCATTTGCATGCCCAGTTACCCGATTTAAACTGTACAAATTAATCAAATGATAAATCTTTTTTAGGGATTACAGAGTTGCATATATTTTACATGGTTTAATATTTAACTGGTGGCAtagtagtgttgctgcctcatagctccagggtccccggtttgatcctgaccttaggttactgtctgtttagagttttgcatgttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37138 lncRNA downstream 2499 21569856 ~ 21612822 (-) True G31486
TU37143 lncRNA downstream 6154 21607396 ~ 21609167 (-) True G31491
TU37141 lncRNA downstream 11458 21602544 ~ 21603863 (-) True G31489
TU37132 lncRNA downstream 82862 21532248 ~ 21532459 (-) True G31481
TU37101 lncRNA downstream 203148 21389477 ~ 21412173 (-) True G31454
TU37369 lncRNA upstream 488523 22104198 ~ 22104411 (-) True G31681
XR_004577195.1 lncRNA upstream 514750 22130425 ~ 22132698 (-) True LOC117596032
XR_004579711.1 lncRNA upstream 557676 22173351 ~ 22175740 (-) True LOC117599244
XR_004579710.1 lncRNA upstream 580919 22196594 ~ 22197668 (-) True LOC117599242
TU37433 lncRNA upstream 608710 22224385 ~ 22226660 (-) True G31742
XM_034298204.1 mRNA downstream 36242 21538999 ~ 21579079 (-) True cachd1
XM_026919886.2 mRNA downstream 83894 21449546 ~ 21531427 (-) True raver2
XM_026930493.2 mRNA downstream 214393 21386910 ~ 21400928 (-) True ak4
XM_026930484.2 mRNA downstream 214394 21386910 ~ 21400927 (-) False ak4
XM_026930474.2 mRNA downstream 237009 21342709 ~ 21378312 (-) False dnajc6
XM_026922851.2 mRNA upstream 18892 21634567 ~ 21756087 (-) True ror1
XM_026928315.2 mRNA upstream 149240 21764915 ~ 21777950 (-) True pgm1
XM_026921318.2 mRNA upstream 180885 21796560 ~ 21815679 (-) True alg6
XM_026923416.2 mRNA upstream 207067 21822742 ~ 21825474 (-) True foxd3
XM_026927983.2 mRNA upstream 341860 21957535 ~ 21968209 (-) True atg4c
XR_004580163.1 other downstream 83893 21463861 ~ 21531428 (-) False raver2
XR_003403848.2 other upstream 2000482 23616157 ~ 23632013 (-) False uap1
XR_004577321.1 other upstream 4285055 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 4465474 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 5015154 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 5024158 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile