RNA id: XM_026933319.2


Basic Information

Item Value
RNA id XM_026933319.2
length 4416
RNA type mRNA
GC content 0.47
exon number 12
gene id gpbp1l1
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22582303 ~ 22593861 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGACGCGGCCGCGCGCTCTGTGATCGATTAGCAGGTCTGTTGGAGAAGTAGACAGGAACAGGACAGACGGAGCGGAGTGTggcttaaaaacacaaacagaaaagaacAAGCGCAAACACGAACAGCGGATAAAACTCGTCGGCTGCCTTGGAGAAGAAGCACATCTGCGTCTTTGTTTAACTTATTTGGCTAGACAACGGATCTgaagAGTTGATCTGCAGAGTggagaagtgaagtgaagcagGAGTCTACTGGATATTTCCTGAATAACACACATCCTACATGAGCTACAattaaacttttgcactctttttgtcttttactaCGTTTGGATTTATATAATCACGTCGTCTGTGAATTGCTGATGCCCAGTGCACTCTGTGTAACAACACCTCTGTTGAAAAGCTGCAGTCTCCAGTATCTGTTCAAGCGTGCTCTGAATTGATGAACTGGAAAATCCACAGGTTTGTGAAGGATCAGATCATACTTCGTTTCAGATACTCTGGCTCTCTGACGTGATACTGGCCCACTAGTGACAAAACCTGAAGATGATGTCAAGTTTTACTTTCACTCTACTGTCATCTGATATGGCCCAAAGTACGAGCTGCTGAAAACTAAAGCAATGCCCATGACTTCGTAGCACCAGGCACCCACAGCTTTTGTGATGTGACGCATCGGCCCCCTTTGTTTTTGCCTTGATCTCGCACCCTCGCTGTTTTAATGAGGTGAACATATTTGGCTCGTGACTTTCTGCAACAAAGCATTGTGTGGTGTAGCCCCAcgctctttcttcttttcctgtGTGTGCATCCTCAGCTTACGATGAGTTTGTGAAAGGAGTTTCTGAGCTTCAAAGCAAGCACGACGTGCTGCTTTTTACAGCCTTCCAGATATAAAGACTGGTCCaaaactcctgggattttttcTTCCACgtcattttcactttattttgtcACTCTGAATGCACTCTGTGATGAGATGAATTGAGGTTGTCCTGGAGAGTCACTCAGACATCACAGCTTGCTTTCTGCATCTTGTACTTCCACCACCATTGATCAAAAGCGCTCCATCTTGACCACTGACCACTACACCCATCTTCCATTTTAACATTACGTGGGACATCCAGACACCAAAACGAGGTCACCTCACTCACTGCACCATCCTGGAGGCTGGAATTTGTTTGTGGCGAGCATCTGTTGTCCTGTGGCTGCTGTTCGTTTGCACACCTGAAGCTGTGTGAGTGGACTGGTGTGAGCGAGTGCAGGGACAAAGCCAAGCACAGGGCCGCTGGACTACAGAGCTCACGACTCTGGGTTCAGGCCATGAGGTTTCATGCCTCGATCCACTGACGGGAGACACTGGACCTAAATGGCGCAGCATGACTTTGTTCCTGCCTGGCTTAACTTCTCCACGCCTCAGCCCGCCAAGTCCCCTGCAGCCCCTCTTGAGAAACATGGTGAGCACTGTGCTCGTGGAGATGGCCGGCCGGGAGTGAGCCGCCGTAGACACAACTCCTCTGACGGCTTCTTCAACAACGATCTGCTCCGCGCTCCGTCAGGTGATGGGTGGCTCCAGCCGTCTCTGCTGAGGCATGACTCTGTGGACTCTGGTGTCGCTAAGGGCAATCAGGGAGGTTTGGGTAGTGGACATGGCTGGAAGGAGACCCCCAGCTGGCATGGGGCCCCGCGCGGTCAAGAGGGCCCTCACCATCACCACGGGCGCCATGCCAAACGCGGAGGAGGAGACAGGGACAGGCAGGGTGGCCATCGGCAGCGCAACGGCAACTTCCATCCACGCAAAGGCGCTCCCTTCCAGGACCGTTACTCTGACGAGGAGCGCAATGATGACAAGCTTAAGTTTGTTGAAGAGGATTTTCCCTCCCTGAATCCAGAGACGACTGGAAAGCCAGTGAGTCAGGCTCGCGCTGTGGGAACTCCAGCAGGCGTGTGGGAGAATCCTCCCAGCGCTAAACAGGCTGTGTCTAAGATGCTGGTCATTAAGAAAGTGTCTAAGGAGGACCCCAGTGCTGCATTCTCCGCTGGTTTTGCCAGTGCCGGCCCTCTGCCTGCCAACGGCTCCAAAGTCCCCATCACTGGACCCAGTGTGTACAAGAACCTGGTTCCCAAACCTGCTACTGCCCCAACTAAGACTGGCCCTTGGAAACCCAATGGAAGGGAAACTAAAGTGGGTTTGCATTTCTCTGGTCGGGATTCAGCCTTCACCAGCCCTGTGTCTGTGACCAAACCTCTGACCCCAGTCAGCGCACCACCCCATGGCACTCCAAAAGAGCCACCATCCAGCACTACTCCTCCAATAGACATCACTCCTCCTCGGCTGAAGCTGATGCGGCGTGGCACAGACCGTAAGAGCGAGTTCCTGCGTGGACTGAAGGACGAGAGGAATGGAGAGATGAGCAGCTGCCACAGCCCTGGAGCTCCAACAGAGggAGACAGTGGTACTCCTGAGCCTAAAGAGTACGGGGAAAGCCATGAGAACGgcatgtctcactctcttaGTGACTCTGACACTGAGCACCTATCCAGCTCACTGGAGGCTGAACACCGGCTGCTTAAAGCAATGGGCTGGCAGGAGTATCCCGAGAATGATGACTTCCAGCCTCTCACAGAGGACGAACTCAAAGAGTTCCAGGCTAAGACCGAGCAGATGAAGAAGAACGGGCTGGGGCGTAACGGTGTGCTCCTGAAGCCGCGCGCTGTGGCGCTGCTGACTTGGAGGAACTCCACCAACACCGGCCTGGATGAAGGCTCCGAGTCTGAGACCAGCAGTAGCAGCCAGACTTCGGACGACGAGGACACCTAACGTGGCTTTAAATCTCCCCTTGTCCTCTTCCTCCATCACTCTcgctcactttctctctgtctctcttacatCATACCTTACATTTCAAGcgaaaagaagaaaatggttGAATATATTGTTTCCATGGACAAGAGCCATCAGTCATATCCCAGTGAGAGAGAACACTGAAATGACATGTCATGGgcaatttgtttttctttcttccttttctctcctgttctcatgtttttccctttttctcccCAGACTAGAAATGTCTATctaaagccacacacacacacacacacacatcccccaccagatgttttttgtttttgcttggGAAAAAAGACTAACTCATAATAACACCAATTATAACCGTGACTTAACGTGGAATATGACTTCATCtgaatgttatataaaatgGCTTTGACACCTTtctcaaatatatttttttttcctttttgcgAAAACAATTCGTAGCATTAGTGTTAAGATGAAACAATCATTGTGAGCCACTAACAGCGGCGTTGCTCCCAGTCCCTCATAGAAATGAACACAAGCCAGCAAGAAAGCACTAAAACGAAAGCCCAacagaaatctttttttatttttattttttttggtagtACAGTTTGGCAGCTAAGATCTTAGCCCTGCTCTTGTGTTTGACTCAAACTGTACTGGTTCCATTGTTCTCACTCTGCTTTTTCAACTAAATGTGAGCAAGCTTGTGAATGTACGATCAAAGTGACATGTTGGATTTGATATGTAGCTTACATGAGAGTTTATTGCCTAGCATTTGTGAGTGAAGAGAAGTTCATTATGAAAAAGCAGTAATAGAGGAAAGCGTCACTGTCCAATGGGTTTTCTTTGGATAAACTCAccgtcaaacacacactgtctcagtgCAATTTCATTTGATGGACAAAATTAGTCTGATTTTGGACTTGCAGAATTTCAAATGGTTCTTCTTGTTCTATGAGAAGTTCAATCCCAAAGAATTATAGTTAATGTTCTCCTGATGCCAGAATGTAGAGATTAAGCATTTTACAAGTCACCCATGATTCATCAATTCCAGTGGATACTgttgcaggaaaaaaatcaataaatgaatagaGACTTAAAGGTAATTAGAGGAAAATGCAGTCTTGTCAAGCACATTTGAATCCACTGGCAAGAAATTACTATGTAGTGAATGATTTCTAATTGGCTTGTTAGAAAAGAGCGTTTAGCCTGTAGAGCTTTCCTCTTGGCTCCTACTTGTAAAAGcaagttctgttctgttcacagATGTGTTTACGAGAACTCTAGATGCTCTTCTGTCCGTGCAGCTGATAGAACGGTAGATGCCCTTCTGCAAAAGTTCTGTATTTCATGAGGGACTGCTGGTGGAAATTATGCATCtccttttttttgtaccttgttTTTGCTGATAGGGTATAAAAAGGCTTTATTACAGAtttaagtttctttttttatgttggtACAGCTGTAAAAAATCCCacataaatagtttttttttcttcttttgtttgcaTTATGTTGTTCCTGCAGCCTTGATATTCAGGGTGGATTGTaaaaaatataagaataaaaattgTGAGTTTTGGAA

Function

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37658 lncRNA downstream 4468 22577631 ~ 22577835 (-) False ccdc17
TU37647 lncRNA downstream 13467 22565292 ~ 22568836 (-) True G31934
TU37648 lncRNA downstream 13467 22565292 ~ 22568836 (-) False G31934
TU37625 lncRNA downstream 21695 22538323 ~ 22560608 (-) True G31916
TU37446 lncRNA downstream 266297 22315806 ~ 22316006 (-) True G31755
TU37952 lncRNA upstream 117352 22711213 ~ 22785690 (-) True G32157
XR_003403825.2 lncRNA upstream 396586 22990447 ~ 22995189 (-) True LOC113538262
TU38041 lncRNA upstream 448670 23042531 ~ 23042762 (-) True G32244
TU38121 lncRNA upstream 631221 23225082 ~ 23225389 (-) False dmrt2b
TU38487 lncRNA upstream 1084921 23678782 ~ 23683686 (-) True G32629
XM_026933625.2 mRNA downstream 360 22572432 ~ 22581943 (-) True ccdc17
XM_034300001.1 mRNA downstream 30004 22547254 ~ 22552299 (-) True LOC113538473
XM_034300010.1 mRNA downstream 30076 22547254 ~ 22552227 (-) False LOC113538473
XM_034300006.1 mRNA downstream 30190 22547254 ~ 22552113 (-) False LOC113538473
XM_026933565.2 mRNA downstream 30978 22547254 ~ 22551325 (-) False LOC113538473
XM_034312142.1 mRNA upstream 179265 22773126 ~ 22964855 (-) False pik3r3b
XM_034312138.1 mRNA upstream 179265 22773126 ~ 22964855 (-) False pik3r3b
XM_026933188.2 mRNA upstream 179265 22773126 ~ 22964855 (-) True pik3r3b
XM_026933189.2 mRNA upstream 179265 22773126 ~ 22793323 (-) False pik3r3b
XM_026933190.2 mRNA upstream 179265 22773126 ~ 22792974 (-) False pik3r3b
XR_004580163.1 other downstream 1050875 21463861 ~ 21531428 (-) False raver2
XR_003403848.2 other upstream 1022296 23616157 ~ 23632013 (-) False uap1
XR_004577321.1 other upstream 3306869 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 3487288 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 4036968 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 4045972 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile