RNA id: XM_026912544.2


Basic Information

Item Value
RNA id XM_026912544.2
length 3901
RNA type mRNA
GC content 0.39
exon number 6
gene id si:ch211-161c3.6
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9063525 ~ 9072606 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgcatggtgccctgtgatggactggtgtcctatcTGGTATATGTTCCTGACTTGCACCCGGTGCTCCTGGGATAGGAGCcggtgaccctgaccaggaaaaagcagttactaaagacaAGGTTAGCCGTTCACTGAATCGGTACCTCCACATCACTTTTGTGGAGAGACCAACTGTCCCCACAAGGTTGGGAATATCTGacccctgctgaaaaaaaaaaacaatagaaaccatcacagaaattctgatagtttccactacaaatccatccatccatcctctgtactgcttattatacacagggttgcaggggagtctggagcctatcccaggtgACTCAGGGCACAGACTAACAAACTAAAACTATCGAGTCACTGTATGCGAAAAGTAACTGCAACTGTAACTTACTGGTAatcaagctctctctctcacacacacacacacaaggacctTCCACTGGCAAAATTGTTTAGTTAATGCTGTGCCTACACCTAGGACAGGGTACctacccatcacagggcacaggCACACACTTTggagatgccaatcagcttatgatgcatgtctttggactgggggaggaaacccccaaaccatggggagaacatgcaaacagggcagaggcaggaatcaaacccccaaccccagaggtagaaggcaaacatgctaaccactaagccactgtgtgGCTCCCATTACAAACTGTCAGCTGTTaaccaataaaaacaaatacaattcccattaaaaccattacaaattctatgagggtttctattgtttttttgttttttttttcagcagggacagTTTGACAGATATCATAGAGACATTTGGCTGCTCCCCATGAGGAAAACCCCTCTTTTTTGACAAACACTGCAACTttaatgatagatagatagatagatagatagatagatagatagatagatagatagatagcattaACTAGGTGCATTAAATAATTATGCCAGTGGAAGGTCCTTAGACCTATAGTAAagaaacttgtgtgtgtgagagagagagagagagagagagagagagagcttgatTACCAGTAAGTTACAGATGCAGTTACTTTTCGCGTACAGTGACTCATTAGTTTTAGTTTATTAGTCATGTTAGTATTAGTCGGTTTTGCTTTGTCAAAGTAGGAAACGGACAAAAATTACGCCGTGAAGTACCGGATCAGGGCAATGTGTcaaatcaaccaatcaaatcaGGCCAAATGCAAAGGCATTCAAGTCAGCTTTGACTAAAGTGTATTTGTATTGCCATGATCTCACTATACACACGTTATAGTGAAGCTCCAGGTTGAGGACTGGCTGAAGACGGGGGAAATGGGAGGTGTTTCTCTTTGACGTGTAGCTCTGTTCATAGCCAGGTATCAGATACTCTTAGTGCCATACACGTGTGATATTACAGCGACTTCATGGAGAACAAGAACAAGCGGTAGACCTCCATCAGCGaacagagtgtgtgtggagtctaTGTGAGGTCTGGCCAGGATGGAAGAAGAGATAAGTGTAGCAACAGCTGAACCGGCTGCTACACCATCAACTGAAGCTCCAGAGGCACCTCGCCGAGGCAGAGGCAGACCACGCAAACCAAAACAGGAGCCTGTTGAACCTCCTGCTCCCAAAAGGCCAAGGGGAAGACCCAAAGGGAGTAAGAATAAGGCCAACCGTAGTACACCCAAAGAACCACCAAAGGAAAAGAGACCTCGAGGCCGACCAAGGAAATGGCCTCAAAAAGCAGTGCAGCAAAAAGAGCAAGAGCTTGAGGAAGAAGAGGACCAGCCACACCTGCCATCACCACACAAGAACGCCTAGGCTCTGAGCCGCCAGTGTGTGCAATAGGCTGCATTTAGACAGTTATATCCAGCGTTCTCATGTAGGTGTGTTATCAATCACTtgacaaaaaaatacatggaGCCTGTCCTTGCCAATTCCCAAAGCACTAATatcagaaaaacagaacattcCCCCTAATAATTAGATACCAAAAACCACTTAGTGAATGGTGAACAACTCTGAGTTGAGCACTGTGGATTGTATATACTCTTAGGTTTTGATTACATATCTTCTAAACTGCATCAAGTAATACCAGACTTGGActtatttaaacatttgtgaaacagaTACAGCTATATATGCACATGACAATATGATCTACCAAAAAGTGATTCGGATTGCAAACTGGATTTGGGTGTCCCATCCATCTGTCTAAATGTAGCCATAGACCGGCACTTACATCAGATTTTTCTACACCTCAGACTTGACAGAAAACAACATCTAACAGGTGCTTTCAGTATGAATTGAAAAACACTTTTACTTACAGCCATCATAGTCttatagtacagtatatatgaTATGGTACTGAATGAGTCACTACTATACCATTTCATTTTATCGGTACAACACcagctattttatttttcagctgtTATTtgtctacatttacatgcaatcatttggctgacacttttatccaaacgAGTTACAATTGAGATGGGATACAACTGATTGGTTGACGATTAAGGGTCTTGCTTAAAGACCCAAGCACACAGCTTGGACAGAAACTGTCATGGTGTATTTCTGCTAAGATCAGTCCCTGACatttataacaattttttttatttcaatgtttaCACTTGAGTGTCTAGCTGTACTTGAAAATGTGTCAAACCTAGTGAATTTtactatttgaaaaaaaaagtcttttttgtttacaatatcAGATAGATTACTAGATCATTTTCTGCTGCAGTAAACTTGACACAGTCTGTCAAAAGCAGAGATAAAGTTTgaaactaaaaaagaaaaaaaaagttacagggAGAAAAAGTGTTTACCACTTAAgtactgttttcatttttttcagtgaatgaAATGTTGTGCAGTTTAATGATGCAGTAAACAATTGTCAGAATGCCTCAGTAGTTAAATACATAatcctctttattctctctttaatGTCTATTTCTCTAATTGGTCAGTCTCTAGAATACTACACTTTATTGcgcttttcaatttttttcctccactttggtgtgctttttgaatgacaagcatttttttaagaaaaaaaaatcttgataactgtactgatttttttattggcaTTGTTTATATACAATACTTATAATGTCTTATTTCTGTGTCATGAATCCTCCATGTTGTTacattcgttcatcttcagtaatccctttatcctggtcagggttgcggcaGATCCTGAGGATCACCAGGCATGTCCATGTTGTTACATGATTTAATACTGGAATTGCATGATGTCTGGTCTGCTAAATACAAGATACCTTCATACACTGTTTagtgaatttacatttttatattgcatACATTGGTTTAAAAAGGTGATACCTCATAAAGATAGCTAAGGTAAATGTTCAGCAAGAGGGATTAGACCATTCAGAACTTGAGATTTTATGCTTTGCCTCAGTTTTATACGTCATCTCATTAGTTCTATAGTTTCTACTGCCAGTGTTGAAAGCGTATGCATCAGAAGGATGATTTTTATGATCCATTGCCTTATTTctctttaatcacacacctcAGTTAACAGGAGAAGTGCATACTTTTGCCTGTGTTAATCTGCTGTTGAGTCAATTGATGTTTTTACATCTTCACTGAATGAAACGTTTAAAAGGGTAATGCCTCATGAATACTGCCAAACCgtgacttatttttatttacctcaattttatgcattttaatagttCTCGTTTCTCAAATAGTGAATAATGGAGCCTTAAAACAAGTGTATGCCTTGTATTGTGTTGACCACgtcatgattttaaaaaatatgaatatccCAGTAAACCATGCAGTTGTgactttataaaacatttcagtaaattcaataaaaaacgatcaaacattca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28428 lncRNA downstream 41967 9020069 ~ 9021558 (-) True G23977
TU28424 lncRNA downstream 59013 9004289 ~ 9004512 (-) True G23973
TU28397 lncRNA downstream 73318 8909219 ~ 8990207 (-) True G23952
TU28192 lncRNA downstream 371375 8691939 ~ 8692150 (-) True G23758
XR_004579952.1 lncRNA downstream 546666 8511307 ~ 8516859 (-) True LOC117599540
TU28447 lncRNA upstream 979 9070406 ~ 9070769 (-) True G23991
TU28529 lncRNA upstream 210495 9279922 ~ 9286655 (-) True G24073
TU28543 lncRNA upstream 261053 9330480 ~ 9330828 (-) True G24087
XR_003402903.1 lncRNA upstream 265241 9334668 ~ 9335327 (-) True LOC113527743
TU28667 lncRNA upstream 340481 9409908 ~ 9410303 (-) True G24185
XM_026921180.2 mRNA downstream 26192 9012676 ~ 9037333 (-) True gnb1b
XM_026915833.2 mRNA downstream 81504 8973169 ~ 8982021 (-) True rbm5
XM_026917064.2 mRNA downstream 109961 8922124 ~ 8953564 (-) False slc38a3b
XM_026917047.2 mRNA downstream 109961 8922124 ~ 8953564 (-) True slc38a3b
XM_026913318.2 mRNA downstream 148439 8860372 ~ 8915086 (-) True gnai2b
XM_026932599.2 mRNA upstream 5485 9074912 ~ 9088027 (-) False mst1
XM_026932517.2 mRNA upstream 5485 9074912 ~ 9088027 (-) False mst1
XM_026932442.2 mRNA upstream 5485 9074912 ~ 9088027 (-) True mst1
XM_034300325.1 mRNA upstream 28664 9098091 ~ 9318675 (-) False cacna2d2a
XM_034300328.1 mRNA upstream 28664 9098091 ~ 9318675 (-) False cacna2d2a
TU28035 other downstream 579344 8481051 ~ 8484181 (-) False tcta
TU28036 other downstream 579411 8481051 ~ 8484114 (-) False tcta
TU28034 other downstream 579496 8481051 ~ 8484029 (-) False tcta
XR_004580309.1 other downstream 798296 8262619 ~ 8265229 (-) False mitfa
TU26888 other downstream 2583514 6479402 ~ 6480011 (-) True G22591
TU28673 other upstream 366136 9435563 ~ 9441810 (-) False tusc2a
TU28828 other upstream 646100 9715527 ~ 9718970 (-) False tnnt2b
TU29080 other upstream 793940 9863367 ~ 9868278 (-) False G24516
TU29342 other upstream 1419866 10489293 ~ 10490295 (-) True G24760
XR_003403751.2 other upstream 4169277 13238704 ~ 13238806 (-) True LOC113537313

Expression Profile