RNA id: XM_026912700.2


Basic Information

Item Value
RNA id XM_026912700.2
length 1775
RNA type mRNA
GC content 0.46
exon number 2
gene id trim107
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14557562 ~ 14560676 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGAGATGAATAATGATTTCCATAACAGGCTACCCATAATGCGTGCTGTGTGCACGTGAGTCATGGACAGGTGTTTACAGCTGTAAGCGTTTGCTCAACTCCTGCAGCACTGCTACTGTACACCAACCCGAGGACGTTAAAGCTTGAACCAAGATCAAGAGTTTGGTAAAGTTACCAGAGATGGCTTCAAGTTTTTCTGAGAATTCCTTGGAACAGGAGCTTAGCTGCTGCATTTGTCTCCAACTATTTTCCGACCCTGTAACGTTTCATTGTGGACATTCATTCTGCCTCGCATGTCTGGAGAAGAGCAGGAGCTTTAAGGCAGATTTATCTGACAATCGCTGCCCAGATTGCAGAGTGGAGTACGAGAATTCTGAATTTCCACAGAGGTACCTTAAACCGCAAAACACAGTTGAAAGTTGCAAGGCCACCATTCAGGAGACAGATGAAGGTGCACCTCAGAGAGGCGTAGAAGTAGAGGTGATGGAACAAAAAGATGAGCCATCTTGTTCTAGCCAGGAAGAAGATGGATGTGAAGCAATGTGCAACACTGGTAACGATATTGCTGATCATTCAGACTGTATAGAAATCAAGTTGTCCAATGAGTTAAGCAAACACAGATCTCGATTAACTCCTGTGATGATGGATATCCAAGCCAAGATTGAACTCGTGGATGATCTGCTGGCCAAGGCAAAGGAAAAAGAAGCCGCAGTCAAGACATCAAACACCAGATTTAAAGCAGAAGTGAAAACGGTTCTGGAGGAGATGGTGGAGCTTCTAAGGAGCTACAGCACAGCAGGGATGGAGCTTCTAGAGGCCCAGTTAAGGCCAAGAGAGGAGGTTTGGGAGACCAGTGTTCAAACACTGTCCGATCTCCATAGGCAGCTTAAGGAAACAGAGCTCCAAGTTAACACCTTGTTGAAGGAGCAAGATGAAGTTAGAGTTTGTAAAGAGATCCTAGAGGTTGAGAAACTTGCTGCCAGCCTGATTGCAGAACCTCAGAAAATTGGAGCGTGTGATGAGAATGAGGCAACCATCAACATGACCCCCATGTGTGAGGAAATGGAACACTGCAATTACGACCTCCGTCTCAAACTTGGAGCTGCCCAACGTCGTTTACGAAATATTCTCAACCCTTCTGAGGTGACTTTTGACTCTGAGACTTTGCATCCTTGCCTGGTGCTGTCTGAGGATCTTAAAACTGTGTCCTTCAGTGTTGTCAAACAACCTTATCCAGCTGGACCACAGAGGTTCACCAACTACTTTCAGGCTCTGAGTTCCCAAAGCTTCTCCAAAGGAGAACACTGCTGGATTCTGCAAGCCGAAGGTTGCCCATGGGTTCTGGGGCTGTGCTATGGGGGGCTGCCCCGCTCTGGTACTGAAAGTGGTCTAGAAAGCAGAAGTGGAGCTTGGTGCCTAATGTGGTACGAAAACCTACTTAGGGCATatgaaggaggaagagagaccCCGCTCAAGCGTACCCCTTTTTTCCAGAAGCTGGAGATCCGCCTTAGCTTCAGCAAAAACTGTGTAACATTTTCTAGCATAAGCAATGTTACTGGAGCCAAAACTCATCTCCACACTTTTAATGTGAGCTTCATTGAGCCTGTCTATTTGGCTGTGAGAATGATGTCTGGTCAGCCTAAAGCTCGAATAACATTGTGCGGTAATGTTAAATCCGCCTCATAGCAACAGCATCTCCGGTTCTCTCCTGAgcttttgcatgttcttcttgtttctacaattttaaaaataaaatctggtttttcttcttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32201 lncRNA downstream 64723 14492637 ~ 14492839 (-) True G27303
TU32157 lncRNA downstream 103271 14444626 ~ 14454291 (-) True G27259
TU32152 lncRNA downstream 156133 14354841 ~ 14401429 (-) True G27254
XR_004577242.1 lncRNA downstream 306298 14238795 ~ 14251264 (-) True LOC117596067
TU32061 lncRNA downstream 384641 14172672 ~ 14172921 (-) True G27169
TU32377 lncRNA upstream 229755 14790431 ~ 14790641 (-) True G27448
TU32421 lncRNA upstream 299329 14860005 ~ 14860246 (-) True G27484
TU32441 lncRNA upstream 323579 14884255 ~ 14884487 (-) True G27502
TU32551 lncRNA upstream 449649 15010325 ~ 15010661 (-) True G27600
TU32615 lncRNA upstream 504209 15064885 ~ 15065211 (-) True G27652
XM_026928987.2 mRNA downstream 3089 14545189 ~ 14554473 (-) True tpra1
XM_026922331.2 mRNA downstream 16240 14496220 ~ 14541322 (-) False chchd6b
XM_026922322.2 mRNA downstream 16240 14496220 ~ 14541322 (-) True chchd6b
XM_026922339.2 mRNA downstream 16241 14496220 ~ 14541321 (-) False chchd6b
XM_026909744.2 mRNA downstream 100330 14278049 ~ 14457232 (-) False plxna1b
XM_026922080.2 mRNA upstream 1500 14562176 ~ 14581300 (-) True zgc:123305
XM_034314129.1 mRNA upstream 30729 14591405 ~ 14598546 (-) False LOC113529797
XM_026919264.2 mRNA upstream 30729 14591405 ~ 14598460 (-) True LOC113529797
XM_026919235.2 mRNA upstream 39987 14600663 ~ 14702035 (-) False dlgap4b
XM_026919227.2 mRNA upstream 39987 14600663 ~ 14702035 (-) True dlgap4b
trnae-cuc_5 other downstream 165211 14392280 ~ 14392351 (-) True trnae-cuc_5
TU31994 other downstream 499117 14050401 ~ 14058445 (-) True G27107
XR_004579719.1 other downstream 650373 13873714 ~ 13907189 (-) False lhfpl4a
TU31814 other downstream 922910 13632262 ~ 13634652 (-) False rps26l
TU31648 other downstream 1057578 13498605 ~ 13499984 (-) False slc5a8l
XR_003403256.2 other upstream 312272 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other upstream 312273 14872949 ~ 14875990 (-) False pxmp4
TU32819 other upstream 736633 15297309 ~ 15299019 (-) True G27843
TU32916 other upstream 895959 15456635 ~ 15461001 (-) True G27925
TU32920 other upstream 901274 15461950 ~ 15469229 (-) False oxtr

Expression Profile